Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30364
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77655-5|CAB01132.2|  458|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    29   3.9  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      29   3.9  
AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical ...    28   9.1  
AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z77655-5|CAB01132.2|  458|Caenorhabditis elegans Hypothetical
           protein C56A3.6 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -3

Query: 551 DISRILRKYI*F---GKHLFKTWD-SSLGSTTMYVFLSCLV 441
           DI RIL+K   F   GKH F+T D S + S + Y+FL  L+
Sbjct: 124 DIQRILKKTPPFRSGGKHFFRTMDQSGIISYSEYIFLLTLL 164


>Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical
           protein E01G4.1 protein.
          Length = 393

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 558 NLVSNFKQRPYETTLEAFSKLTDIV 632
           +++S F Q PY T +  FSK+T  V
Sbjct: 202 DILSRFMQNPYMTAMTGFSKITSFV 226


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 155 LITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDSRIFGRAS*KYP*TI*KRFASPVTTNK 334
           LI ++ D++   WA+V  VG  Q T     ++DS++        P  I KR   PV T K
Sbjct: 723 LILVEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKR--HPVLTAK 780


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 155 LITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDSRIFGRAS*KYP*TI*KRFASPVTTNK 334
           LI ++ D++   WA+V  VG  Q T     ++DS++        P  I KR   PV T K
Sbjct: 716 LILVEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKR--HPVLTAK 773


>AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical
           protein ZC416.6 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 373 FYFQH--GNAEIFVAYLKNHLKT 435
           FY +   G +EIF AYLK++LKT
Sbjct: 397 FYLEQKLGGSEIFEAYLKDYLKT 419


>AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical
           protein Y20F4.8 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 332 KCSSRRNRESGRIRSISNMETPRYSWPI*RI 424
           K +SR   E G++  +     PRY+WP+ RI
Sbjct: 150 KATSRLKPEIGQVVLVFQKLLPRYAWPMARI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,626,608
Number of Sequences: 27780
Number of extensions: 436741
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)