Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30361
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)      188   5e-48
SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   7e-22
SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)           95   5e-20
SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)           78   1e-14
SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)              75   1e-13
SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)           58   1e-08
SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)                    48   7e-06
SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)                   44   1e-04
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                29   3.6  
SB_25868| Best HMM Match : zf-GRF (HMM E-Value=5.1e-21)                29   4.7  
SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)                    28   8.2  

>SB_50882| Best HMM Match : Metallophos (HMM E-Value=8.00001e-41)
          Length = 293

 Score =  188 bits (458), Expect = 5e-48
 Identities = 81/82 (98%), Positives = 82/82 (100%)
 Frame = +1

Query: 256 YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 435
           YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF
Sbjct: 93  YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTF 152

Query: 436 TDCFNCLPVAAIVDEKIFCCHG 501
           TDCFNCLPVAAI+DEKIFCCHG
Sbjct: 153 TDCFNCLPVAAILDEKIFCCHG 174



 Score =  163 bits (397), Expect = 1e-40
 Identities = 73/84 (86%), Positives = 80/84 (95%)
 Frame = +2

Query: 2   NIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHG 181
           N+D++I +LL+VRG +PG NVQLTE EI+GLCLKSREIFLSQPILLELEAPLKICGDIHG
Sbjct: 8   NVDSIISRLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHG 67

Query: 182 QYYDLLRLFEYGGFPPESNYLFLG 253
           QYYDLLRLFEYGGFPPESNYLFLG
Sbjct: 68  QYYDLLRLFEYGGFPPESNYLFLG 91


>SB_52368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score =  101 bits (242), Expect = 7e-22
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +2

Query: 2   NIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHG 181
           ++DNVI++LL  + + PG  VQL E +I+ +C  SREIFL QP+LLE+ AP+ I GDIHG
Sbjct: 11  DVDNVIEQLLSYK-KNPGKQVQLPEAQIRQICQVSREIFLQQPMLLEIGAPINIFGDIHG 69

Query: 182 QYYDLLRLFEYGGFPPESNYLFLG 253
           QY DLLR F+  G+PP  +Y+FLG
Sbjct: 70  QYEDLLRHFDKLGYPPNESYIFLG 93


>SB_49199| Best HMM Match : Metallophos (HMM E-Value=2.5e-25)
          Length = 173

 Score = 95.5 bits (227), Expect = 5e-20
 Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWKT 432
           +VDRG  SLET   LL  K K+P+   LLRGNHE   I ++YGFYDEC+ +Y N   W+ 
Sbjct: 80  FVDRGYYSLETFTRLLTLKAKWPDRITLLRGNHESRQITQVYGFYDECQSKYGNANAWRY 139

Query: 433 FTDCFNCLPVAAIVDEKIFCCHGGL 507
               F+ L VAAI+D ++ C HGGL
Sbjct: 140 CCKVFDLLTVAAIIDGQVLCVHGGL 164



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 26/62 (41%), Positives = 40/62 (64%)
 Frame = +2

Query: 68  LTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLF 247
           L E ++K LC    E+ L +  +  + +P+ +CGDIHGQ+YDL  LF  GG  P ++Y+F
Sbjct: 17  LPENDLKKLCDYVCELLLEESNVQPVSSPVTVCGDIHGQFYDLEELFRTGGQVPNTSYVF 76

Query: 248 LG 253
           +G
Sbjct: 77  MG 78


>SB_38314| Best HMM Match : Metallophos (HMM E-Value=5.1e-07)
          Length = 199

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 30/63 (47%), Positives = 47/63 (74%)
 Frame = +2

Query: 65  QLTEIEIKGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 244
           QLTE ++K LC K++EI   +  + E++ P+ +CGD+HGQ++DL+ LF  GG  P++NYL
Sbjct: 23  QLTEAQVKTLCEKAKEILSKESNVQEVKCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYL 82

Query: 245 FLG 253
           F+G
Sbjct: 83  FMG 85



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 570 QGLLCDLLWSDPDKDTGRLG 629
           +G +CDLLWSDPD D G  G
Sbjct: 105 KGPMCDLLWSDPD-DRGGWG 123


>SB_36816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 39/61 (63%), Positives = 43/61 (70%)
 Frame = +3

Query: 510 PDLQAMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTGRLGARTIAESASLFGTEVGGAKF 689
           P   +MEQIRRIMRPTDVPD GLLCDLLWSDPDKDT   G      S + FG +V  +KF
Sbjct: 51  PPNMSMEQIRRIMRPTDVPDTGLLCDLLWSDPDKDTNGWGENDRGVSFT-FGADV-VSKF 108

Query: 690 L 692
           L
Sbjct: 109 L 109


>SB_31501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +2

Query: 113 IFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLG 253
           I   +  +LE++AP+ +CGDIHGQ+YDL++LFE GG P  + YLFLG
Sbjct: 69  ILRKEKTMLEVDAPITVCGDIHGQFYDLVKLFEVGGSPATTRYLFLG 115



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 38/116 (32%), Positives = 50/116 (43%), Gaps = 32/116 (27%)
 Frame = +1

Query: 256 YVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGF---------------- 387
           YVDRG  S+E  CL       Y    FLLRGNHEC  +   + F                
Sbjct: 117 YVDRGYFSIE--CL-------YTNTLFLLRGNHECRHLTEYFTFKTESANFLDYITAREK 167

Query: 388 -----YDECKR--RYNIKLWK------TFTDC---FNCLPVAAIVDEKIFCCHGGL 507
                Y  C R   Y +K  K       +  C   F+CLP+AA+++++  C HGGL
Sbjct: 168 MSPKQYINCARVTHYTLKSGKIKYSEAVYDACMESFDCLPLAALMNQQFLCVHGGL 223



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = +3

Query: 510 PDLQAMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDTG 620
           P++  ++ ++++ R  + P  G +CDLLWSDP +D G
Sbjct: 225 PEIHTLDDVKKLDRFKEPPAFGPMCDLLWSDPLEDYG 261


>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
          Length = 417

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
 Frame = +1

Query: 259 VDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASIN-RIYGFYDECKRRY---NIKLW 426
           VDRG +S+E   +L A+ I YP   ++ RGNHE   +N RI       K +Y     ++ 
Sbjct: 17  VDRGPRSIEICIILFAFTILYPNGVYINRGNHEDHIMNLRIIVTKAGGKDQYKDSRSEII 76

Query: 427 KTFTDCFNCLPVAAIVDEKIFCCHGGL 507
           +TF      LP+A IV+ KIF  HGG+
Sbjct: 77  RTFRKYLGWLPLATIVNNKIFVAHGGI 103


>SB_10504| Best HMM Match : MBOAT (HMM E-Value=0.16)
          Length = 465

 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 18/22 (81%), Positives = 21/22 (95%)
 Frame = +3

Query: 549 RPTDVPDQGLLCDLLWSDPDKD 614
           RP DVPD+GL+CDLLWSDPD+D
Sbjct: 116 RPMDVPDKGLVCDLLWSDPDED 137


>SB_49265| Best HMM Match : efhand (HMM E-Value=0.68)
          Length = 720

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
 Frame = +2

Query: 92  LCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLL----RLFEYGGFPPESNYLFLG 253
           +C   RE+ + +P +L +++P+ + GD+HG + DL+     L+  G     SN+LFLG
Sbjct: 652 VCRSLREVVMEEPRMLRVQSPVYVLGDLHGNFRDLVCFEKLLWRMGPVLTPSNFLFLG 709


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -2

Query: 727 REIFKFELVVWTRNFAPPTSVPKSEADSAIVLAPSRPVXXXXXXXXXXXXRPWSGTSVGL 548
           ++ F +  VV+TR+    TSV K +  +AI+ AP+R                + G     
Sbjct: 98  KQFFGYFGVVYTRSQDKDTSVKKFKKSNAIINAPNRKTKWKDSDKEKLKRNDYQGQRSRQ 157

Query: 547 MIR-RICSIACRSGTDRRDNRRFS 479
            +   +  ++ R      DNR++S
Sbjct: 158 SVEMEVTEVSKRPQKSSHDNRQYS 181


>SB_25868| Best HMM Match : zf-GRF (HMM E-Value=5.1e-21)
          Length = 614

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 523 LWNRSGGS*GRQTCPTRACSATCSGPTPTRTRAGWG 630
           LW+ + GS        R+  A  S   PTRTR G G
Sbjct: 500 LWSSTNGSSSWNDSVNRSAKAVASSNGPTRTRTGQG 535


>SB_38634| Best HMM Match : DUF164 (HMM E-Value=0.6)
          Length = 493

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 262 DRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 363
           D  KQS  T+C+LL Y+ KY E  + +  N EC+
Sbjct: 444 DTTKQSRRTVCMLL-YRAKYIEGCY-ISVNTECS 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,981,302
Number of Sequences: 59808
Number of extensions: 623234
Number of successful extensions: 1580
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)