Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30361
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   8.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   8.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.1  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   8.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 LFLGAMWTVASSPWKQYACSS 304
           L L A W+V +  W   +CSS
Sbjct: 401 LLLDADWSVNAGMWMWLSCSS 421


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 733 PRFVPRMGYAVFFPKKGKFGS 795
           PRF+P   Y +  P   +FGS
Sbjct: 166 PRFIPPNAYRLRPPLNPRFGS 186


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 733 PRFVPRMGYAVFFPKKGKFGS 795
           PRF+P   Y +  P   +FGS
Sbjct: 166 PRFIPPNAYRLRPPLNPRFGS 186


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 557 CRPHDPPDLFHSLQVRHRP 501
           C P   PD+ + +++R RP
Sbjct: 195 CCPEPYPDITYEIRLRRRP 213


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = -3

Query: 753 HPWDEPWLP 727
           H W  PWLP
Sbjct: 540 HTWIHPWLP 548


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 739 TLVAREIFKFELVVWTRNFAP 677
           TLVA + +   L  WT N  P
Sbjct: 180 TLVAEQSYGLTLPSWTNNIFP 200


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 739 TLVAREIFKFELVVWTRNFAP 677
           TLVA + +   L  WT N  P
Sbjct: 195 TLVAEQSYGLTLPSWTNNIFP 215


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +2

Query: 260 WTVASSPWKQYACSSPT 310
           W    +PW    C +PT
Sbjct: 136 WRTCGNPWNTRYCLTPT 152


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +2

Query: 260 WTVASSPWKQYACSSPT 310
           W    +PW    C +PT
Sbjct: 189 WRTCGNPWNTRYCLTPT 205


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 739 TLVAREIFKFELVVWTRNFAP 677
           TLVA + +   L  WT N  P
Sbjct: 83  TLVAEQSYGLTLPSWTNNIFP 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,145
Number of Sequences: 438
Number of extensions: 5746
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)