Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30360
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.61 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.4  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    27   4.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.3  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.6  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   7.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 225 TTQGIPTGTLVFPKYRPSRYPS*ANSP*ATTRTASLLCTG-TPSRTYSP*SCDRCSNTPR 401
           TT G+PT ++  P    S YPS  +S    +R +S L +   P+ T+   S       P 
Sbjct: 720 TTSGLPTSSVSTPLSNSSAYPSSGSS--TFSRLSSTLTSSIIPTETFGSTSGSATGTRPT 777

Query: 402 PSSS 413
            SSS
Sbjct: 778 GSSS 781


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 32  ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTHHAIPVK 163
           AL IVI +TVG+ QE+        L  LV H  +V +  KT H +  K
Sbjct: 88  ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 677 YQLRDSSKHGRSQFTQHS*PPFKPLARSQHLVS 775
           YQL ++S+H   +   H+   ++P+ RSQ+ ++
Sbjct: 88  YQLLENSRHDFKELVLHTNQLYEPVKRSQNFLT 120


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +3

Query: 180 LSMKLMKPTPHPLTRTTQGIPTGTLVFPKYR-PSRYPS*ANSP*ATTRTASLLCTGTPSR 356
           +S  + +PT   +  ++  +P+ + V P+   P    S A+SP +T  T+S + +   S 
Sbjct: 452 ISTSVKQPTAS-VASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSST 510

Query: 357 TYSP*SCDRCSNTPRPSSSCTGTPYST 437
             S  S    +++  PSSS   +P ++
Sbjct: 511 LLSGSSAIPSTSSSTPSSSIISSPMTS 537


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 162 LTGIAWWVLIFCGTSCFTK 106
           + GIAW  LIF   SC TK
Sbjct: 31  ILGIAWLFLIFLCCSCLTK 49


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
 Frame = -2

Query: 691 VPELINLQR*NPDF--LSAVYLTVRMDRQPREDCISPFT--TSPSRISCWYLLSPVWGSS 524
           V   + L R +PD    S V+  +  D         P T  T   R+   YL  P+    
Sbjct: 211 VAPTLGLNRIHPDGKEASTVFKRIAFDGHTSLVLCKPLTGRTHQLRVHLQYLGYPIANDP 270

Query: 523 ILYSKHIWGMHNDLHGE 473
           I  +K +WG     +GE
Sbjct: 271 IYANKRVWGPSLGKNGE 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,283
Number of Sequences: 5004
Number of extensions: 62476
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)