Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30360
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       33   0.36 
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    28   7.8  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   7.8  
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246...    28   7.8  
02_01_0169 - 1166683-1166790,1166981-1167043,1167376-1167447,116...    28   7.8  
01_01_0788 + 6111890-6112002,6112121-6112265,6113012-6113086,611...    28   7.8  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 189 KLMKPTPH-PLTRTTQGIPTGTLVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 365
           +L  PT   P T +T+ + T T   P    +   S A S   +T   SLL + T     +
Sbjct: 500 ELSTPTSQIPSTASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPST 559

Query: 366 P*SCDRCSNTPR-PSSSCTGTPYST 437
           P +C+  + T + PS++CT +P ST
Sbjct: 560 PSTCELSTATGKIPSTTCT-SPLST 583


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 243 WECPEWFS*ADAAWASLVS*TGATW 169
           W+ P+W++   A W +  S TG +W
Sbjct: 853 WQEPQWYAQLYAQWQTTASWTGQSW 877


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 216 ADAAWASLVS*TGATWAVLTGIAWWVLIFCGTS 118
           + A W   ++ +   W++L G+ WW  + C  S
Sbjct: 674 SSAVWERAIADSRFWWSLLAGVDWWDAVGCTQS 706


>06_03_0647 +
           23122074-23122187,23123423-23123488,23124467-23124676,
           23124849-23125060,23125641-23126208
          Length = 389

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 355 RDGVPVQSSEAVRVVAHGEFAHDGYRDGR 269
           RD  P  + E VR+ A G + +DGY +G+
Sbjct: 226 RDHKPSCNREKVRIEASGGYVYDGYLNGQ 254


>02_01_0169 -
           1166683-1166790,1166981-1167043,1167376-1167447,
           1167734-1167811,1168420-1168548,1169373-1169483,
           1169587-1169655,1169733-1169870,1170322-1170460,
           1170797-1170852,1171677-1171732,1172034-1172078,
           1172225-1172303,1172770-1172864,1173074-1173449
          Length = 537

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 405 WGVVYWSSDHSFMDYRCVMVYRYKVVRLFVWLLMVSLLMMGIVTDDTLGR--PACPWECP 232
           WG     +  SFM     ++Y  K   +   +L+ SL+M+G +T  T+G      PW  P
Sbjct: 363 WGEPLSQTAQSFMPE---LIYGAKCNLMKARMLLKSLVMIGAITGTTVGAVGTLVPWLFP 419

Query: 231 EWFS 220
             F+
Sbjct: 420 SLFT 423


>01_01_0788 +
           6111890-6112002,6112121-6112265,6113012-6113086,
           6114171-6114250,6115500-6115569,6115664-6115759,
           6116633-6116756,6116921-6116967,6117044-6117127,
           6117199-6117252,6117451-6117551,6118744-6118834,
           6119989-6120153,6121341-6121412,6122025-6122111,
           6122899-6122952,6122992-6123062,6123882-6124029
          Length = 558

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -2

Query: 394 VLEQRSQLHGL*VRDGVPVQSS----EAVR-VVAHGEFAHDGYRDGRYFGKTS 251
           V++ R QL  +  R G+P+ S     EAVR  +  G FA+  + +GR++  TS
Sbjct: 442 VIDIREQLVRIIKRFGIPLTSCDRDMEAVRKAIIAGAFAYACHLEGRFYSHTS 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,672,664
Number of Sequences: 37544
Number of extensions: 421781
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)