Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30360
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)                   30   2.6  
SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)                      29   4.6  
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 29   6.1  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_28246| Best HMM Match : M (HMM E-Value=0.0007)                      28   8.0  

>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 261 PKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDRCSNTPRPSSSCTG 422
           P   PSRY      PS  N+P +T    +   + TPSR  +P S     NTP P+ S   
Sbjct: 613 PWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWSTPSRYNTPWPTPSRYN 671

Query: 423 TPYST 437
           TP+ST
Sbjct: 672 TPWST 676



 Score = 29.9 bits (64), Expect = 2.6
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
 Frame = +3

Query: 213 PLTRTTQGIPTGTLVFPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*S 374
           P T+ T+  P+     P   PSRY      PS  N+P +T    +   + TPSR  +P S
Sbjct: 498 PNTKVTESTPSRYNT-PLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWS 555

Query: 375 CDRCSNTPRPSSSCTGTPYST 437
                NTP  + S   TP+ST
Sbjct: 556 TPSRYNTPWSTPSRYNTPWST 576



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
 Frame = +3

Query: 201 PTPHPLTRTTQGIPTGTLVFPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTY 362
           P P P    T          P   PSRY      PS  N+P +T    +   + TPSR  
Sbjct: 513 PLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYN 571

Query: 363 SP*SCDRCSNTPRPSSSCTGTPYST 437
           +P S     NTP  + S   TP+ST
Sbjct: 572 TPWSTPSRYNTPWSTPSRYNTPWST 596



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +3

Query: 204 TPHPLTRTTQGIPTGTLVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDR 383
           +P P+T+        T V  +  PSRY    N+P  T    +   + TPSR  +P S   
Sbjct: 485 SPPPVTQKLDACVPNTKV-TESTPSRY----NTPLPTPSRYNTPWS-TPSRYNTPWSTPS 538

Query: 384 CSNTPRPSSSCTGTPYST 437
             NTP  + S   TP+ST
Sbjct: 539 RYNTPWSTPSRYNTPWST 556


>SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 65  YCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVY 187
           Y  EH+ H  +   + +HDVP K   HH    K  H  P Y
Sbjct: 142 YHHEHSRHPVS-DYIPEHDVPDKKPEHHVPDNKPEHHIPDY 181


>SB_44848| Best HMM Match : COQ7 (HMM E-Value=1.6)
          Length = 340

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 213 PLTRTT-QGIPTGTLVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 365
           PLT     G+P GT V P+Y P R       P  T+RT++   T T + TY+
Sbjct: 231 PLTGVKYSGLPEGTKVLPEYTPRR-------PVNTSRTSASDYTDTEALTYA 275


>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 507 CFEYKIEDPHTGDNKYQHEIRDGDVVKGEIQS 602
           C  +++ D  T D KYQHE+     ++  I S
Sbjct: 563 CSTFEVSDHVTPDEKYQHELNKNRALRDRIDS 594


>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 364

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 357 CVMVYRYKVVRLFVWLLMVSLLMMGIV 277
           C MVYRY+++R F    +VSL +  I+
Sbjct: 28  CYMVYRYRILRTFTNGFVVSLALSDIL 54


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 71  QEHNHHGYTLQTLVKHDVPQKIKTHHAIPVK 163
           Q+H H    L+T+VK D P  ++T  +  +K
Sbjct: 658 QDHMHESLKLKTIVKGDAPTSLQTSTSANIK 688


>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
          Length = 1121

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 234  GIPTGTLVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 365
            G+P GT V P+Y P R       P  T+RT++   T T + TY+
Sbjct: 1020 GLPEGTKVLPEYTPRR-------PVNTSRTSASDYTDTEALTYA 1056


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,967,199
Number of Sequences: 59808
Number of extensions: 498028
Number of successful extensions: 1520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)