Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30360
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    22   6.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 QGIPTGTLVFPKYRPSRY 284
           Q +P G LVFP +R   Y
Sbjct: 53  QVLPNGNLVFPPFRAEDY 70


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 627 YEWTVSLVKTVFLLSLHHHRGSRAGTYCHRCGDL 526
           + W+   V   +L S ++   SR GT  HR G L
Sbjct: 178 FGWSWDEVMPYYLKSENNTELSRVGTKYHRSGGL 211


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +2

Query: 617 VHSYR*IHS-----RQKIRVSTLKVYQLRDSSKHGRSQ 715
           V SY+ I S     RQ +  S L VY+ + S +HG  +
Sbjct: 176 VESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHGNKK 213


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 397 GVLEQRSQLHGL*VRDG 347
           G+L Q  Q HGL V++G
Sbjct: 193 GILSQHPQQHGLGVQNG 209


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 622 FVPLNTQPTKNQGFNA 669
           FV +  QP KN+ FNA
Sbjct: 313 FVTVQIQPLKNELFNA 328


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = +2

Query: 617 VHSYR*IHS-----RQKIRVSTLKVYQLRDSSKHG 706
           V SY+ I S     RQ +  S L VY+ + S +HG
Sbjct: 144 VESYKQIKSDLDVLRQSVEKSELWVYKSKASEEHG 178


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 404 GAWCIGAAITASW 366
           GA C+G++I A W
Sbjct: 578 GATCLGSSIKAMW 590


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 11  TSKMFGKALGIVIFLTVGYCQE 76
           TSK+FG+AL   I  TV +  E
Sbjct: 456 TSKLFGRALSRRIKATVLFATE 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,489
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)