Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30360
         (824 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-...    30   2.1  
At1g32450.1 68414.m04005 proton-dependent oligopeptide transport...    30   2.1  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    29   2.8  
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    28   8.7  

>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
           / HD-ZIP transcription factor 17 identical to
           (GI:18857716) homeodomain-leucine zipper protein ATHB-17
           (GI:18857716) [Arabidopsis thaliana]
          Length = 275

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 438 LLNMVYRYMMNWGVVYWSSDHSFMDYRCVMVYRYK-VVRLFVWLLMVSL 295
           ++ +++ Y+  +    ++  H  MDY CV +Y+YK +V L V L  + L
Sbjct: 1   MIKLLFTYICTYTYKLYALYH--MDYACVCMYKYKGIVTLQVCLFYIKL 47


>At1g32450.1 68414.m04005 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 614

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -2

Query: 643 AVYLTVRMDRQPREDCISPFTTSP----SRISCWYLLSPVWGSSILYS 512
           A Y+T R     ++D ++P+   P      + C   L P+W  +I+YS
Sbjct: 317 AAYITARDLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYS 364


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -2

Query: 724  LGKLAPSVL*RVPELINLQR*NPDFLSAVYLTVRMDRQPREDCISPFTTSP 572
            LG++ P+   R+P   + Q  NP+ LS   L V+  +     C++P TT P
Sbjct: 1318 LGQMTPASQLRLPS--DPQPSNPERLSLDSLVVQYLKHQHRQCLAPITTLP 1366


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 71  QEHNHHGYTLQTLVKHDVPQKIKTH 145
           Q H HH    QT +++ +P++I +H
Sbjct: 676 QNHKHHEIQNQTAMENQIPEEITSH 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,544
Number of Sequences: 28952
Number of extensions: 336274
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)