Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30356
         (828 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.8  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.0  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   9.0  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.0  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 388 LSDLRSLIDSVYSMEFKFKLRFGRTTR*LKFI 293
           + + ++ +D  Y M+ +F L F  +   +KFI
Sbjct: 694 VEEAKTFVDRCYKMQEQFTLNFRNSDELIKFI 725


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 778  TVRVPAISPPGLRKPGLATSFKIV 707
            T+RV  +SPP     G+   +K++
Sbjct: 1116 TIRVSWVSPPLTAANGVIKGYKVI 1139


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 468 KQREMTNLKSVKQINLLVIKMVKI 397
           ++R   NLKS+K++NL   K+  I
Sbjct: 132 ERRAFMNLKSLKRLNLKGNKIATI 155


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 638 PFNTNITIVTGLKTWLKYYTPKIYKL 561
           P N N+ + +  + W + Y P  Y L
Sbjct: 60  PPNENLVVTSSNRPWWERYQPVSYIL 85


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 638 PFNTNITIVTGLKTWLKYYTPKIYKL 561
           P N N+ + +  + W + Y P  Y L
Sbjct: 61  PPNENLVVTSSNRPWWERYQPVSYIL 86


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 638 PFNTNITIVTGLKTWLKYYTPKIYKL 561
           P N N+ + +  + W + Y P  Y L
Sbjct: 61  PPNENLVVTSSNRPWWERYQPVSYIL 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,727
Number of Sequences: 336
Number of extensions: 4176
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)