Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30356
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    26   5.7  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       26   5.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.5  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   7.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.9  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    25   9.9  

>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 521 YYYFNLRDTRFTFVTSCKNKEK*LILNR 438
           +Y   L D  +TF+T CKN +   IL R
Sbjct: 348 FYIDKLGDEYYTFLTGCKNPKACTILLR 375


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 236 DSAKLNLTMHFTISKLNLDNKFQLTRSSTKTKLK 337
           D A   ++  F ISK N D    LT    KTK+K
Sbjct: 415 DPAVDRVSSTFKISKQNFDESLVLTDPKKKTKIK 448


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 741 GNQDWPLPLKS*KLWKSPAQAKSVDWS 661
           G+ D+ + LK  K   SP++A S++W+
Sbjct: 5   GSNDYGVSLKGNKTGSSPSKASSLNWN 31


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 371 ASQVRKIAGILTIFITSKLICFTDLRLVISLCFYTML 481
           +S V+ I GIL +  +++++CF   R+ +   FY +L
Sbjct: 84  SSFVKSIVGILEVDASNEILCFR--RICLLCVFYKLL 118


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 542 IYNIRDPYYYFNLRDTRFTFV 480
           ++++ D  YYFNL   RFTFV
Sbjct: 155 LFDMADFPYYFNLIIKRFTFV 175


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 643 LHSN*KAPVDAFGLGGTFPQLSRF 714
           LH++ K P   F +GGT   +SR+
Sbjct: 301 LHADDKTPAIGFDMGGTSTDVSRY 324


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 730 LATSFKIVKVVEKSRPSQKRRLE 662
           +A++ +++KVVEK RP  K   E
Sbjct: 19  VASALEVLKVVEKKRPELKLEFE 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,456
Number of Sequences: 5004
Number of extensions: 66382
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)