Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30356
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406...    30   2.0  
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995...    29   4.5  
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487...    29   6.0  

>09_06_0246 +
           21837144-21838194,21838692-21840038,21840576-21840656,
           21842740-21842924
          Length = 887

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 388 DRRNLDHFYYK*INLFYRFKISHFSLFLHD 477
           D  N  HFY   ++  +RF I HF L L+D
Sbjct: 519 DDNNSGHFYVSSLDRDHRFDIGHFKLCLYD 548


>01_06_0684 +
           31196825-31197252,31199189-31199291,31199402-31199512,
           31199614-31199697,31199915-31199986,31200073-31200129,
           31200427-31200546,31201301-31201324,31201953-31202063,
           31202165-31202202,31202287-31202443,31202700-31202801,
           31202878-31202934,31203113-31203259,31203429-31203499,
           31203582-31203669,31203810-31203866,31203996-31204193
          Length = 674

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 650 QIEKLQSTLLAWAGLFHNFHDFKGSGQSWF 739
           ++E + + ++  AG++H  H  KG+G  WF
Sbjct: 478 ELENVSTNIMKIAGIYHWKHGRKGTGVYWF 507


>04_04_0090 -
           22747049-22747282,22747438-22747847,22748562-22748757,
           22749511-22749583,22749673-22749753,22749855-22749940,
           22750050-22750126,22750313-22750409,22751025-22752020,
           22752882-22752926
          Length = 764

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -3

Query: 820 PMEIFTQKWLENWPTVRVPAISPPGLRKPGLATSFKIVKVVEKSRPSQKRRLELFN 653
           P+E+F        P  +VP  S P + K   ATS  + + +E    + +R   L N
Sbjct: 423 PIEVFVDDECAGKPAPQVPKSSKPSIMKLRQATSRNLKREIELLMENPQRNFPLTN 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,984,858
Number of Sequences: 37544
Number of extensions: 393946
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)