Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30356
         (828 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY064174-1|AAL47186.1| 1984|Drosophila melanogaster rho GTPase g...    31   1.9  
AE014296-900|AAF47940.2| 1984|Drosophila melanogaster CG32239-PA...    31   1.9  
BT003509-1|AAO39513.1|  629|Drosophila melanogaster RE33779p pro...    29   5.9  
AE014296-1600|AAF50309.2|  629|Drosophila melanogaster CG4476-PB...    29   5.9  

>AY064174-1|AAL47186.1| 1984|Drosophila melanogaster rho GTPase
           guanine nucleotideexchange factor GEF64C protein.
          Length = 1984

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 778 TVRVPAISPPGLRKPGLATSFKIVKVVEKSRPS 680
           TVR+PA+S     +  +A + ++V   +KSRPS
Sbjct: 187 TVRLPAVSGSSSSRRPMAATMRVVSATKKSRPS 219


>AE014296-900|AAF47940.2| 1984|Drosophila melanogaster CG32239-PA
           protein.
          Length = 1984

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 778 TVRVPAISPPGLRKPGLATSFKIVKVVEKSRPS 680
           TVR+PA+S     +  +A + ++V   +KSRPS
Sbjct: 187 TVRLPAVSGSSSSRRPMAATMRVVSATKKSRPS 219


>BT003509-1|AAO39513.1|  629|Drosophila melanogaster RE33779p
           protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = -3

Query: 583 IHLKYINYYKLSKAFTTSGILIITLIYAILDLR 485
           +++K  NYY++  +  T  ++++ L+Y++L +R
Sbjct: 498 LNIKTSNYYRICWSIVTPLVMLVILVYSLLTMR 530


>AE014296-1600|AAF50309.2|  629|Drosophila melanogaster CG4476-PB
           protein.
          Length = 629

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = -3

Query: 583 IHLKYINYYKLSKAFTTSGILIITLIYAILDLR 485
           +++K  NYY++  +  T  ++++ L+Y++L +R
Sbjct: 498 LNIKTSNYYRICWSIVTPLVMLVILVYSLLTMR 530


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,083,552
Number of Sequences: 53049
Number of extensions: 678808
Number of successful extensions: 1606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)