Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30356
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    36   0.027
U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    30   1.8  
Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine re...    28   9.4  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    28   9.4  

>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
           receptor, class w protein112 protein.
          Length = 375

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +3

Query: 459 LFVFTRCYKRKSSIA*IKVIIRIPDVVNALLNL**FIYFRCIVLKPCFETSDYCNVSIKR 638
           + V TR   R SSI  I   + I D+++A+ N+   I      + PC+  + Y N+ I  
Sbjct: 55  VIVLTRPSMRTSSINIIMTAVAIADIISAIYNIHLKIVLILTDIYPCYSKNLYHNLIILD 114

Query: 639 PFAFKLKSSSRR--FWLGRDFSTTFTILKEVANP 734
              + L+  +RR   WL    +T  T++  V NP
Sbjct: 115 NCLYCLQDYTRRCSTWLSLSIATIRTLV--VRNP 146


>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +3

Query: 459 LFVFTRCYKRKSSIA*IKVIIRIPDVVNALLNL**FIYFRCIVLKPCFETSDYCNVSIKR 638
           LF+ TR   R SSI  +   + + D+  +L+++  F+     ++  CF T  Y  + + R
Sbjct: 57  LFILTRKSMRTSSINILMAAVALFDIFASLVHIQLFLEQYSYLIFKCFPTDTY-GLVLTR 115

Query: 639 PFAFKLKSSSRR 674
                +K  SRR
Sbjct: 116 TLLIVVKDFSRR 127


>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -3

Query: 787 NWPTVRVPAISPPGLRKPGLATSFKIVKVVEKSRPSQKRRLELFNLN 647
           ++ + R P   P   R+  L +S K++   + S  ++KR L LF++N
Sbjct: 67  HFTSFRAPVAPPSRPRRSQLPSSAKLLYCFDSSFSTEKRELMLFSMN 113


>Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical
           protein W06G6.8 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
 Frame = +3

Query: 408 FLLQVN*FVLPI*D*SFLFVFTRCYKRKSSIA*IKVIIRIPDVVNALLNL**FIYFRCIV 587
           F++ +  F+L I     L + TR   R SS   I   I I D+V  L  +   +Y+  I 
Sbjct: 21  FVIAIVGFILTI---PHLLILTRKSMRSSSTNSIMTGIAILDLVVLLEVVLEHVYYFWIY 77

Query: 588 LKPCFETSDYCNVSIKRPFAFKLKSSSRR--FWLG 686
             PC   S+Y N  +       LK +  R  FW+G
Sbjct: 78  DNPCINHSNY-NFELFLWIGDFLKDTGERASFWMG 111


>AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein132 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +3

Query: 459 LFVFTRCYKRKSSIA*IKVIIRIPDVVNALLNL**FIYFRCIVLKPCFETSDYCNVSIKR 638
           + + TR   R SSI  I   +   D+ + LLNL   I         CF  S Y  V I  
Sbjct: 56  IIILTRKPMRTSSINLIMAAVAAFDIFSFLLNLEITIVDIIYSYNACFNDSSYAAVLI-N 114

Query: 639 PFAFKLKSSSRR--FWLGRDFSTTFTILKEVANP 734
               +LK  +RR   WL     T  T++  + NP
Sbjct: 115 SLLHQLKEYARRCSTWLLFSIVTIRTLV--IRNP 146


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 671 TLLAWAGLFHNFHDFKGSGQSWFP*SGGGNCRHSD 775
           + L  + L+HN   F G  Q W   S GG  R +D
Sbjct: 505 SFLYQSSLYHNNKGFNGLLQEWLEDSEGGGARWND 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,027,524
Number of Sequences: 27780
Number of extensions: 366058
Number of successful extensions: 703
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)