Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    77   2e-16
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.4  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 76.6 bits (180), Expect = 2e-16
 Identities = 37/83 (44%), Positives = 50/83 (60%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLKDGDTITRQLL 184
           V+R+YG E L+  IR+ +ELA YF  LVR DERF I  E  + LVCFRLK  + I   LL
Sbjct: 363 VLRLYGIENLQAFIRKHVELAHYFESLVRGDERFEITEEVVLGLVCFRLKASNEINEALL 422

Query: 185 ENITQKKKVFMVAGTHRDRYVIR 253
           + +  +  + +V    RD Y +R
Sbjct: 423 KRLNGRGVIHLVPSKIRDVYFLR 445



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 253 IVICSRLTKKEDVDYSWSQIKKETD 327
           + ICSR T+K D+D SW ++K+  D
Sbjct: 446 LAICSRFTEKADIDISWKEVKEAAD 470


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -2

Query: 820  SLVRRTRMDQPYKTMQSANTSAKTNWRLLLCKVIMCRVNHLHGDYITHVNP-FGYW 656
            S+  +  ++ P    Q A TS  TN      K     V  +HG Y  H  P FG W
Sbjct: 1386 SVTHQLIVNAPPHAPQIALTSTTTNSLTFKLKPHESDVEPIHG-YTIHYKPEFGDW 1440


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,592
Number of Sequences: 336
Number of extensions: 5039
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)