Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    31   0.29 
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.5  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    27   4.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.2  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   8.2  
SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr 2||...    26   8.2  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 41  HIRQQIELAQYFAKLVRADERFV 109
           H+ +Q+E A YFA L RAD  F+
Sbjct: 419 HVEEQLEPADYFALLTRADALFI 441


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 98  RPHVPVLQNTVLILFAV*YAFSNLQHHKFS 9
           + H+PV Q   +IL  + Y F+++ HHK S
Sbjct: 56  KAHIPV-QIVYVILTLIGYIFAHISHHKAS 84


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 812 KKN*DGPTLQNHAECKYFRKNELEAFVVQSNNVSGQSPPW*LY--HTREPVWILEVEFS 642
           K+N +  T    + CK      LE+F   S+    QS    LY  H+ +   I++ EFS
Sbjct: 32  KQNFEKKTADTQSSCKLLLVALLESFCKHSDQTPEQSKQMFLYVAHSLQNSGIIDFEFS 90


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 344 KYTIKHKYQLLNNSLQENYAKNLSK 418
           KYT+  K Q  +N LQ+N  K++SK
Sbjct: 609 KYTLVGKTQSNSNLLQDNAEKHISK 633


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 125 SVRAQSQNVRPHVPVLQNTVLILFAV*YAFSNLQHHK 15
           SV  +S+ +   + +L  T   +FA+ YA   + HHK
Sbjct: 175 SVFGESEYILAFIKLLFITGFYIFAIIYAAGGIPHHK 211


>SPBC409.03 |swi5||Swi5 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 347 YTIKHKYQLLNNSLQENYAKNLSKDKFST*VRHIDLI 457
           + ++ + + L +SLQ+  AK  ++D   T  +HIDL+
Sbjct: 11  HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLL 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,801,278
Number of Sequences: 5004
Number of extensions: 81841
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)