Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0115 - 13008835-13008877,13009117-13010621                       68   1e-11
10_07_0005 - 11744073-11745653                                         57   2e-08
08_01_0275 + 2249794-2251338                                           57   2e-08
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179...    57   2e-08
01_06_0855 - 32494491-32496092                                         54   2e-07
08_01_0277 - 2262557-2264128                                           53   3e-07
05_06_0036 - 25090942-25092639                                         49   6e-06

>10_07_0115 - 13008835-13008877,13009117-13010621
          Length = 515

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLK----DGDTIT 172
           V+R YGA G++ HIR+ + +A++F + V ADERF +  +   +LVCFRL+     GD + 
Sbjct: 385 VLRRYGAAGMRAHIRRHVAMAEWFERAVSADERFEVVAKRRFSLVCFRLRGGGGGGDAMN 444

Query: 173 RQLLENITQKKKVFMVAGTHRDRYVIR 253
           R+LL  +    + FM       ++VIR
Sbjct: 445 RELLAAVNASGRAFMTHFVVEGKFVIR 471


>10_07_0005 - 11744073-11745653
          Length = 526

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRL-----KDGDTI 169
           V+R YG EGL+ HIR  + +A  F  +VRAD RF +      ALVCFRL     K  + +
Sbjct: 403 VLRCYGVEGLREHIRSHVGMAAAFEGMVRADARFEVVTPRRFALVCFRLRSPNKKTANEL 462

Query: 170 TRQLLENI 193
            R+LLE +
Sbjct: 463 NRRLLEEV 470


>08_01_0275 + 2249794-2251338
          Length = 514

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLK---------- 154
           VMR YG   L+ HIR  + +A+ F  LVR D+RF +      ALVCFR++          
Sbjct: 392 VMRTYGVAKLQEHIRSDVAMAKVFEDLVRGDDRFEVVVPRNFALVCFRIRAGAGAAAATE 451

Query: 155 -DGDTITRQLLENITQKKKVFMVAGTHRDRYVIR 253
            D D   R+L+E + +  K ++       R+V+R
Sbjct: 452 EDADEANRELMERLNKTGKAYVAHTVVGGRFVLR 485


>07_03_0164 +
           14616156-14616225,14616409-14616477,14617672-14617902,
           14618394-14618557,14618795-14618935,14619632-14619691,
           14620358-14620522,14620676-14620732,14621084-14621148,
           14622235-14622358,14622469-14622606,14622705-14622830
          Length = 469

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/90 (30%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRL-------KDGD 163
           V+R+YG + L+++IR+ I LA++F +L+ +D RF +    T +LVCFRL       ++G 
Sbjct: 348 VLRLYGVDNLQSYIRKHIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRLVPPTSDHENGR 407

Query: 164 TITRQLLENITQKKKVFMVAGTHRDRYVIR 253
            +   +++ +    K+F+       ++V+R
Sbjct: 408 KLNYDMMDGVNSSGKIFLSHTVLSGKFVLR 437


>01_06_0855 - 32494491-32496092
          Length = 533

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 32/50 (64%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLK 154
           V+R YG EGL++H+R  + +A  F  +VR D RF +      ALVCFRL+
Sbjct: 402 VLRCYGVEGLRSHVRSHVAMAAAFEAMVRGDARFEVVAPRRFALVCFRLR 451


>08_01_0277 - 2262557-2264128
          Length = 523

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLK---------- 154
           VMR YGA  L+ HIR  + +A+ F  LVR D+RF +      ALVCFR++          
Sbjct: 393 VMRTYGAGKLQEHIRSDVAMAKTFEDLVRGDDRFEVVVPRNFALVCFRIRPRKSGAAIAA 452

Query: 155 ---DGDTITRQLLENITQKKKVFMVAGTHRDRYVIR 253
              + +   R+L+E + +  K ++       R+V+R
Sbjct: 453 GEAEAEKANRELMERLNKTGKAYVAHTVVGGRFVLR 488


>05_06_0036 - 25090942-25092639
          Length = 565

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLKDG 160
           V+R +G +GL+  +R  + +A    ++VRAD RF +      ALVCFRL+ G
Sbjct: 396 VLRCHGVDGLRAVVRSHVRMAAALKRMVRADARFEVPVPRQFALVCFRLRGG 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,654,315
Number of Sequences: 37544
Number of extensions: 497931
Number of successful extensions: 1070
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)