Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.076
SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_4139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 35.1 bits (77), Expect = 0.076
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 83  LVRADERFVIGPEPTMALVCFRLKDGDTITRQLLENITQKKKVFMVAGTHRDR 241
           +V+ D+ F +  +    LVCFR K  +   + L++ +  + K+ +  G H+ R
Sbjct: 1   MVKQDDDFELVVDTNFGLVCFRYKGSEEDNKNLVDILNAEGKILVTPGIHKGR 53


>SB_56201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 575 TISSISAVKQSSAEQSSY*TIKRRTQPPVSKRVHVCDII 691
           TI S +  K    E   Y  IKRR  PP+++  HVC ++
Sbjct: 56  TIESEAEKKAFIVEFVLYEIIKRRKTPPLNRIHHVCYLV 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,008,563
Number of Sequences: 59808
Number of extensions: 615415
Number of successful extensions: 1200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)