Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    24   1.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.5  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         22   8.6  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 676 VNPFGYWRLSSPFNGLIAALLCRRLFHCRNRRD 578
           +NPF Y   S+ F      L CR+ F  R   D
Sbjct: 354 INPFIYAFYSADFRLAFWRLTCRKCFKSRTNLD 386


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 317 KKPTSSIQIKYTIKHKYQLLNNS-LQENY 400
           K+P   I ++ +  HK QL++N  + +NY
Sbjct: 2   KEPMIDITMEISKNHKEQLISNDYILDNY 30


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 777 CRVQILPQKRTGGFC 733
           C ++ L Q+R GG C
Sbjct: 81  CAIRCLAQRRKGGSC 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,288
Number of Sequences: 438
Number of extensions: 5606
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)