Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30355
         (881 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20340.1 68415.m02375 tyrosine decarboxylase, putative simila...    55   7e-08
At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila...    50   3e-06
At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /...    29   5.4  

>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar
           to tyrosine/dopa decarboxylase [Papaver somniferum]
           GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
           4.1.1.25) {Petroselinum crispum}; contains Pfam profile
           PF00282: Pyridoxal-dependent decarboxylase conserved
           domain
          Length = 490

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRL-------KDGD 163
           V+R+YG+E LK++IR  I+LA+ F +LV  D  F I      ALVCFRL       K  +
Sbjct: 371 VLRLYGSETLKSYIRNHIKLAKEFEQLVSQDPNFEIVTPRIFALVCFRLVPVKDEEKKCN 430

Query: 164 TITRQLLENITQKKKVFMVAGTHRDRYVIR 253
              R+LL+ +    K+FM       + V+R
Sbjct: 431 NRNRELLDAVNSSGKLFMSHTALSGKIVLR 460


>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
           to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
           DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
           SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
           {Petroselinum crispum}; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 545

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
 Frame = +2

Query: 5   VMRIYGAEGLKTHIRQQIELAQYFAKLVRADERFVIGPEPTMALVCFRLK--DGD----- 163
           V+R+YG+E L+  IR  + LA++F   V  D  F +      +LVCFRL   DGD     
Sbjct: 423 VLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCN 482

Query: 164 TITRQLLENITQKKKVFMVAGTHRDRYVIR 253
              R+LL  +    K+F+       ++V+R
Sbjct: 483 ERNRELLAAVNSTGKIFISHTALSGKFVLR 512


>At1g03520.1 68414.m00333 glycosyltransferase family 14 protein /
           core-2/I-branching enzyme family protein contains Pfam
           profile PF02485: Core-2/I-Branching enzyme
          Length = 447

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 715 TLLLCTTKASSSFLRKYLHSAWFCRVGPS 801
           T++ CT +A S  LR+ LH  WF  +  S
Sbjct: 178 TMIACTLQAVSILLRESLHWDWFLNLSAS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,515,331
Number of Sequences: 28952
Number of extensions: 417137
Number of successful extensions: 947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)