Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30354
         (781 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    54   5e-06

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 53.6 bits (123), Expect = 5e-06
 Identities = 31/67 (46%), Positives = 42/67 (62%)
 Frame = +2

Query: 470 LPTYRLSYIIYIYTASHSILLGT*VLTDPANFIVPQSINKRTKPMY*IKLKPTKGICPTG 649
           + +Y+L+Y    +T    IL    +L DPA+F+VPQSINKR K +Y I LK TKGI  TG
Sbjct: 1   MKSYKLNYP---HTELSQILFMI-ILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTG 56

Query: 650 VHPRENR 670
              +E +
Sbjct: 57  DTSKEKQ 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,260,740
Number of Sequences: 1657284
Number of extensions: 12644544
Number of successful extensions: 21728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 20982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21718
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)