Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30354
         (781 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   2.1  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   4.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   4.8  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 368 KQLFRIAKCHHEKGEIHIQ*WFLCTISYLLNGS 270
           K L ++AK H+    +H+  W   T   L+  S
Sbjct: 238 KNLVKVAKDHNSLYSLHLLLWITVTFILLVGDS 270


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 115 TFGYIHXXXXXXXXXNSWFVKLT 183
           TFGY H         + WF+  T
Sbjct: 208 TFGYYHILAMLNCLCSLWFINCT 230


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +1

Query: 115 TFGYIHXXXXXXXXXNSWFVKLT 183
           TFGY H         + WF+  T
Sbjct: 208 TFGYYHILAMLNCLCSLWFINCT 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,924
Number of Sequences: 336
Number of extensions: 3582
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)