Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30354
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical p...    29   3.7  
U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus) ant...    29   4.9  
AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like prote...    29   4.9  
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    28   6.5  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    28   6.5  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    28   6.5  

>Z66521-12|CAA91397.3|  614|Caenorhabditis elegans Hypothetical
           protein W02B12.4 protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 318 YPIMVFVHNQLFIEWINFNILKAAGFYQWLCCFAF 214
           YP++VFVH   F E + F+IL   G      C AF
Sbjct: 124 YPVVVFVHGGGFQEVLFFSILNVLGDGNDASCDAF 158


>U64847-5|AAB04874.1|  463|Caenorhabditis elegans Rh (rhesus)
           antigen related protein1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 654 IQGKTGLLFLFNSRAFSFLYPSRDLPRAFPQLFPG 758
           + G  GL+  F S AF F+Y     P  + +++PG
Sbjct: 335 LHGMPGLIAGFASIAFLFIYDETRYPAQYDKIYPG 369


>AF183391-1|AAF97865.1|  463|Caenorhabditis elegans Rh-like
           protein-2 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 654 IQGKTGLLFLFNSRAFSFLYPSRDLPRAFPQLFPG 758
           + G  GL+  F S AF F+Y     P  + +++PG
Sbjct: 335 LHGMPGLIAGFASIAFLFIYDETRYPAQYDKIYPG 369


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 355 ELLNVITRRARYISNNGFCAQSVIY*M-----DQFQYS 257
           E+L+ +T  A + S   FCA SVIY +     DQFQ S
Sbjct: 242 EMLHSLTETAMFFSCISFCATSVIYIVSISFKDQFQIS 279


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 355 ELLNVITRRARYISNNGFCAQSVIY*M-----DQFQYS 257
           E+L+ +T  A + S   FCA SVIY +     DQFQ S
Sbjct: 246 EMLHSLTETAMFFSCISFCATSVIYIVSISFKDQFQIS 283


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -1

Query: 355 ELLNVITRRARYISNNGFCAQSVIY*M-----DQFQYS 257
           E+L+ +T  A + S   FCA SVIY +     DQFQ S
Sbjct: 242 EMLHSLTETAMFFSCISFCATSVIYIVSISFKDQFQIS 279


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,532
Number of Sequences: 27780
Number of extensions: 318440
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)