Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30352
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   0.64 
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.84 
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   2.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.5  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   7.8  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.8  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   7.8  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +3

Query: 9   SNTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVT 170
           S++DS+ +S+S  E  SGD  ++ D   + S++ E+   R  EPAS  +   +T
Sbjct: 204 SSSDSESSSDSSSE--SGDSDSSSDSESESSSEDEK--KRKAEPASEERPAKIT 253


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 12  NTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQV-IPS 188
           NT+++    S +E SS        + E+K+ +PE       EP+ +  TP+    V  PS
Sbjct: 19  NTNNEAVESSTKEESSNTPSTET-QPEKKAEEPEAAA----EPSESTSTPTNASSVATPS 73

Query: 189 EISPTQWAVY 218
             +PT  ++Y
Sbjct: 74  GTAPTSASLY 83


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
 Frame = +3

Query: 27  PTSESIEERSSGDKMAN--LDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISP 200
           PTS  I   +S +   N  L  V + +  P +V N    P      P+ T    PSE  P
Sbjct: 102 PTSSMIPATNSMETNFNNSLPAVGKTNTFPSQVPNMFGPPLYH---PAAT---APSEFMP 155

Query: 201 TQWAVYEEMEDLPEGISIKMPVIKGDPQALPEIPRPFNFKILRGRG 338
           +         +LP      +P +  +P A P  P PF  +  RG G
Sbjct: 156 S----IPGFGNLPNPAMPPIPFLPFNPAAQPPFPPPFKMRGKRGFG 197


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 6   TSNTDSDPTSESIEERSS--GDKMANLDEVEQKSNKPERVRNRIREPASAG 152
           T   + D + E + ERS   GD +  L  +   S  P  +++RI EPA  G
Sbjct: 727 TGQEEIDTSCEILYERSKMLGDSIPELVILPVYSALPSEIQSRIFEPAPPG 777


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 277 SPLITGIFMDIPSGKSSISSYTAH*VGLI--SLGITWKVTDGVLPALAGSLILFRTLSGL 104
           SP+ +     IPS  S +S+Y+A    +   SL +T   +   +P    S  L    S  
Sbjct: 689 SPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSN 748

Query: 103 FDFCSTSSKFAILS 62
               S +S  AI+S
Sbjct: 749 TLLSSITSSSAIVS 762


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +3

Query: 27  PTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSE 191
           P S S  + S+ D   NL+ + Q SN P      I +     K P    QV  SE
Sbjct: 81  PDSNSTPKSSNYDPFENLEILHQLSNTPRDKDAVIHDKIEENKRPISQPQVSASE 135


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/96 (23%), Positives = 40/96 (41%)
 Frame = +3

Query: 27  PTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISPTQ 206
           P   S E +S+ +  +   +    S +P    N  + P+     P    + +PSE S  Q
Sbjct: 463 PAKSSEEAKSTTNDSSPPKDSSSTSTQPTEQSNAQQAPS-----PKEEERPLPSEPSQNQ 517

Query: 207 WAVYEEMEDLPEGISIKMPVIKGDPQALPEIPRPFN 314
            A Y +  D P  I + +P +    Q + ++  P N
Sbjct: 518 PAEYRDTPDTPRNI-MPLPGLMSADQPI-KVTEPSN 551


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +3

Query: 15  TDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEI 194
           +D +P S   EE    D     +  ++K +   RV N+   P S  ++     +   + +
Sbjct: 286 SDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNK--HPPSLRRSRRFFAKKSYNHV 343

Query: 195 SPTQWAVYE-EMEDLPEGISIKMPVIKGDPQALP 293
           S     V   + ED+ +G+S K  +  GD   +P
Sbjct: 344 SDLDGEVIVMKKEDITDGVSTKKDLNDGDQNEVP 377


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 190 SLGITWKVTDGVLPALAGSLILFRTLSGLFDFCSTSS 80
           SLG+T+ ++  +L   AG L L   +S +F  C+T+S
Sbjct: 44  SLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACTTTS 80


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 84  EVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISPTQWAVYEEME 230
           E EQ+  K E++  + +E  +  K    TF+  P E S   W++  +++
Sbjct: 162 ENEQRRLKQEQIDAKRKEEEAREKRMKETFKDDPEEDSNMAWSIIHKIK 210


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 428 TFHKGGVYKIPNIFIPSH 375
           T H  G +K+PN+++P H
Sbjct: 154 TRHCLGKFKVPNLYVPRH 171


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 TQWAVYEEMEDLPEGISIKMPVIKGDP 281
           TQ+  +E++ ++PEG  I M    G+P
Sbjct: 355 TQFNAWEKLPEMPEGAKIYMEKGAGEP 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,703
Number of Sequences: 5004
Number of extensions: 75791
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)