Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30352
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0250 + 28669593-28669660,28669759-28669817,28670144-286702... 34 0.12
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 31 0.66
06_03_1248 + 28685911-28687719 31 0.87
04_03_0442 - 15967204-15967501,15967954-15968126,15968581-159687... 31 0.87
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805 29 2.7
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525... 29 3.5
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 29 3.5
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 29 4.7
04_01_0193 - 2269010-2269834,2271936-2272127 29 4.7
01_06_1278 + 35939392-35939463,35939546-35939819,35939910-359400... 29 4.7
01_06_0380 - 28874699-28874732,28875077-28876116 29 4.7
01_02_0098 - 11087875-11089110,11091744-11092022 29 4.7
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 6.2
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932... 28 6.2
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 28 8.1
05_06_0138 + 25946545-25946632,25946715-25947489,25947627-259479... 28 8.1
03_05_0589 + 25919965-25920331,25920461-25920780 28 8.1
>05_07_0250 +
28669593-28669660,28669759-28669817,28670144-28670248,
28670983-28671019,28671446-28671542,28671700-28671781,
28671870-28671939,28672049-28672212,28672897-28672940,
28673021-28673176,28673273-28673494,28673736-28673883,
28673947-28674034,28675032-28675159,28675259-28675323,
28675380-28675426,28675427-28675539,28676003-28676019
Length = 569
Score = 33.9 bits (74), Expect = 0.12
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +3
Query: 27 PTSESIEERSSGDKMANLDEVEQKSNKPERVRN-RIREPASAGKTPSVTFQVIPSEISPT 203
P+ S + SSG NLD VE++ + +R+ ++R + G TP + EI PT
Sbjct: 444 PSGRSKRQHSSGKSFGNLDPVEEEFPFEQELRDFKMRRLSDVGPTPDLL-----EEIEPT 498
Query: 204 QWAVYEEMEDLPEGISIKM--PVIKGDP 281
Q YE+ + + I++ + +IK +P
Sbjct: 499 Q-TPYEKKSNPIDQITVDVYSVIIKLNP 525
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 31.5 bits (68), Expect = 0.66
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 12 NTDSDPTSESIEERSSGD-KMANLDEVEQKSNKPERVRNRIREPASAGKTPSVT--FQVI 182
N + +P ++S SS + K N+DE+ K NK V I P K ++T +QVI
Sbjct: 505 NEEFNPVNKSTILNSSEEIKHINIDEIMTKMNKTGHV--PINPPDETEKNSALTDSYQVI 562
Query: 183 PSEISP 200
P SP
Sbjct: 563 PDSYSP 568
>06_03_1248 + 28685911-28687719
Length = 602
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 6 TSNTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIP 185
T N +P S ++EE + +++ + ++++ KPE R E + + P I
Sbjct: 376 TQNEPDEPESTTVEEMAVEEEIKTDESQQEETPKPEE-RMENSETSVISEDPK-EMDAIS 433
Query: 186 SEISPTQWAVYEEMEDLPEGISIKM-PVIKGDP 281
+ + V EE E+L E + + + P I +P
Sbjct: 434 EDQKVEEPVVAEEQEELSEVVKMAVEPSISSEP 466
>04_03_0442 -
15967204-15967501,15967954-15968126,15968581-15968716,
15969064-15969288,15969792-15970053,15970062-15970169,
15970337-15970595,15971188-15971199
Length = 490
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 227 HFFIHCPLSRTDFARNHLESNRWCFTRTGWFPDSVSYS 114
H FIH FARNHLES W G D V ++
Sbjct: 122 HLFIHEFEETISFARNHLESMIWDSVLKGPLADQVKHA 159
>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
Length = 310
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 174 QVIPSEISPTQWAVYEEMEDLPEGISIKMPVIKGDPQALPEIPRP 308
Q+ ++ W ++ M + +S+++P KG+PQ+L P P
Sbjct: 260 QLNSADFKLADWISWDPMPHEVDLLSLELPAYKGEPQSLDINPEP 304
>11_06_0388 + 23048576-23051546,23051830-23052371,23052444-23052517,
23053006-23053090,23053281-23053367,23053585-23053657,
23053882-23053925,23054041-23054169,23054301-23054402,
23054529-23054585
Length = 1387
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 27 PTSESIEERSSGDKMANLDEVEQKSNKP--ERVRNRIR 134
P SES EE SS A + EVE+++NKP +R+ ++R
Sbjct: 1103 PVSESTEEASSS---APVKEVERENNKPRAKRMERKVR 1137
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 7 HPILIVIRLVKALKNDLQEIKW 72
H L VIRLV L N+LQ + W
Sbjct: 401 HDALCVIRLVSGLINELQRVNW 422
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 6 TSNTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIRE 137
+S+++SD +S+S E+R S ++ + DE+E+K + R + +
Sbjct: 606 SSDSESDVSSDSREDRKSARQLKH-DELERKKRSQDEKRKELEK 648
>04_01_0193 - 2269010-2269834,2271936-2272127
Length = 338
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -2
Query: 223 SSYTAH*VGLISLGITWKVTDGVLPALAGSLILFRTLSGLF--DFCSTSSKFAILSPE 56
S Y A+ ++ L W++ +G P+L SL FR + ++ +F + +K ++L E
Sbjct: 267 SFYHANLQNMVLLRSDWELRNGTDPSLGDSLFAFRENATVWEMEFAAAMAKLSVLPAE 324
>01_06_1278 +
35939392-35939463,35939546-35939819,35939910-35940012,
35940127-35940257,35940384-35940465,35940554-35940686,
35941134-35941278,35941318-35941475,35941559-35941641,
35942276-35942330,35942466-35942503,35942670-35942730
Length = 444
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 9 SNTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPS 188
S D D S+S E + D V++ ++ ++ +R P +A K +TF+ PS
Sbjct: 324 SGMDKDDASQSHESTPVDSSTSTADPVDELPGDSKKRKSIVRHPLAAQK--KLTFETAPS 381
>01_06_0380 - 28874699-28874732,28875077-28876116
Length = 357
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +3
Query: 63 DKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISPTQWAVYEEMEDLPE 242
+K+A D E+K E + +++ + K SV FQ I S A+ EE+EDL +
Sbjct: 188 EKLAAADR-EKKGRATEI--DGLKDTSDKAKQNSVVFQYIASSSDAKVLALREELEDLQK 244
Query: 243 GISIKMPVIKGD 278
+ + K D
Sbjct: 245 LLQAEKDEFKAD 256
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 387 KYIWNFINSAFVKCLNRDTL*KLHSLR 467
K IW + SAF KC NR L L +L+
Sbjct: 299 KRIWESLKSAFKKCTNRSYLVMLKALK 325
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 15 TDSDPTSESI-EERSSGDKMANLDEVEQKSNKPERVRNRIREP 140
TD SES+ RSSG+ +N SN P VRN++ P
Sbjct: 1022 TDISVASESLGSPRSSGEPCSNGSNGLLVSNGPTSVRNKLSHP 1064
>04_03_0825 -
20092781-20092801,20092844-20093079,20093166-20093244,
20093344-20093482,20093533-20093624,20093714-20093830,
20093930-20094041,20094154-20094260,20094351-20094427,
20094517-20094598,20094702-20094839,20095495-20095608
Length = 437
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 144 WLVP*FCFVLFRVYLIFVQLHPNSPFYLLKIVL 46
WL+P F ++ L F +H N P Y + L
Sbjct: 335 WLIPSFSMLILAFSLDFFGMHMNKPLYTVSYAL 367
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 216 YEEMEDLPEGISIKMPVIKGDPQALPEIPRPFNFKILRGR 335
Y +ED+PE + IK I+ + L P KI+ GR
Sbjct: 1033 YVSIEDIPESVVIKEKEIEMQREDLQSKPENIREKIVEGR 1072
>05_06_0138 +
25946545-25946632,25946715-25947489,25947627-25947910,
25948100-25948238,25948323-25948394,25948477-25948548,
25948726-25948806,25948894-25949054,25949162-25949424,
25949661-25949787,25949974-25950042,25950154-25950346,
25950446-25950860
Length = 912
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 352 QNFPG-PRPLKILKLNGLGISGSACGSPLITGIFMDIPSGKSSISSYTAH*VGLISLGIT 176
+N+ G P K L +GL S + P ITG+ M ISSY A+ + +L ++
Sbjct: 397 KNWTGDPCAPKTLAWDGLTCSYAISTPPRITGVNMSYAGLSGDISSYFANLKEIKNLDLS 456
Query: 175 WKVTDGVLPALAGSL 131
G +P + L
Sbjct: 457 HNNLTGSIPNVISQL 471
>03_05_0589 + 25919965-25920331,25920461-25920780
Length = 228
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 81 DEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSE 191
D+V KS++P PA+A TP++T P+E
Sbjct: 122 DDVAAKSSEPRSATPAALAPAAAPDTPAMTPSAAPAE 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,668,121
Number of Sequences: 37544
Number of extensions: 478404
Number of successful extensions: 1231
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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