Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30352
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51723| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     30   2.1  
SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               29   3.6  
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)                   29   3.6  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    28   6.3  
SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  28   8.3  
SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_51723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
 Frame = +3

Query: 30  TSESIEERSSGDKMANLDEVEQKSNKPERVRN----RIREPASAGKTPSVTFQVIPSEIS 197
           T E  E R   D   N+  +   + +PE V      + R+P S  K+P          ++
Sbjct: 197 TLEGFERRGGPDAFINIKYMATSTKRPEVVAEAFTTKSRQPFSKVKSPPAAGAFAERSVA 256

Query: 198 PTQWAVYEEMEDLP 239
           PT +  + E  D P
Sbjct: 257 PTAFRKFYERGDFP 270


>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 18  DSDPTSESIEERSSGDKMANLDEVEQKSNKPER 116
           D D T + +E R SG+K   +D+ +QK+++ +R
Sbjct: 456 DQDFTDDKVERRDSGEKREIVDKSKQKADELDR 488


>SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +3

Query: 42  IEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISPTQWAVYE 221
           +E   +G++  N           ER+ +  +E     K   +   +  S  S  + AV +
Sbjct: 178 VEGLKTGNECLNQLHEMMSIEDVERIMDETKEAVEYQK--EIDDLLSGSLTSEDEDAVLQ 235

Query: 222 EMEDLPEGISIKMP-VIKGDPQ-ALPEIP 302
           E+E L E IS K P V K +P+ +LPE P
Sbjct: 236 ELEALTESISEKFPDVPKEEPEISLPEAP 264


>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +3

Query: 66  KMANLDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEIS-----PTQWAVYEEME 230
           ++A +D ++ K   P+  + RI   +   + P        S+       P+ W +YEEM 
Sbjct: 170 QIARVDRLDNKLTTPKETKVRIHTSSILYQAPEKNESQSLSQAKAVKQLPSDWLIYEEMT 229

Query: 231 DLPEGISIK 257
            +   +S+K
Sbjct: 230 RMYTSVSVK 238


>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
          Length = 769

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 30  TSESIEERSSGDKMAN--LDEVEQKSNKPERVRNRIREPASAGKTPSVTFQVIPSEISPT 203
           +S +IEE   GD + +  LD+   K +K  + R    E     +TPS +     S+ +P 
Sbjct: 511 SSANIEEFVPGDNLDSGFLDDRSAKQDKTNKTRKATVEKVDVAETPSESSDDSDSDSNPR 570

Query: 204 QWAVYEEMEDL 236
              V    EDL
Sbjct: 571 NPMVAGFAEDL 581


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 18  DSDPTSESIEERSSGDKMANLDEVEQK 98
           D    +ES+EE + GD  ANLD +++K
Sbjct: 332 DRQERTESLEELALGDPPANLDPLDEK 358


>SB_19882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 487

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 129 FCFVLFRVYLIFVQLHPNSPFYLLKIVLQCFH 34
           F F+L   +L ++ L PNSP+ + K    C H
Sbjct: 36  FLFLLVTGFLCYMFLAPNSPYLIGKCEAGCIH 67


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 9   SNTDSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRI 131
           S+  S P S+S+ ++    +  NL EVE+ ++KP +   R+
Sbjct: 131 SSNHSQP-SKSVRKKEKEKEKPNLKEVEKPASKPSKPEKRL 170


>SB_3578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 18  DSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIREPASAGKTPS 164
           D +  SE   +RSSGDK  + +   ++  K ++ +N  +E  S+  + S
Sbjct: 100 DLETVSEERSKRSSGDKSDDSEIASKEVKKDKKKKNYSKEKGSSDNSGS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,643,772
Number of Sequences: 59808
Number of extensions: 544984
Number of successful extensions: 1365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)