Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30352
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23150.1 68418.m02707 PWWP domain-containing protein identica...    29   2.9  
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo...    29   2.9  
At4g01000.1 68417.m00135 ubiquitin family protein low similarity...    29   3.9  
At1g48360.1 68414.m05402 expressed protein ; expression supporte...    29   3.9  
At1g47390.1 68414.m05246 F-box family protein contains F-box dom...    29   3.9  
At1g19870.1 68414.m02492 calmodulin-binding family protein conta...    28   5.1  
At5g62550.1 68418.m07850 expressed protein                             27   9.0  
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p...    27   9.0  
At1g70450.1 68414.m08105 protein kinase family protein contains ...    27   9.0  
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ...    27   9.0  

>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
            cDNA putative transcription factor (HUA2) GI:4868119;
            contains Pfam profile  PF00855:  PWWP domain
          Length = 1392

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
 Frame = +3

Query: 3    ETSNTDSD-PTSESIEERSSGDKMANLDEVE---QKSNKPERVRNRIREPASAGKTPSVT 170
            E    D D PTS+  +  S+G++++ LD++E     S+K  RV   +             
Sbjct: 964  EDDEEDDDLPTSQKEKSTSAGERVSALDDLEIHDTSSDKCHRVLEDVDHELEMEDVSGQR 1023

Query: 171  FQVIPSEISPTQWAVYEEMEDLPEGISIKMPVIKGDPQALPEIPR 305
              V PS     +    E+  D+ E ++ K       P+  P +P+
Sbjct: 1024 KDVAPSSFCENK--TKEQSLDVMEPVAEKSTEFNPLPEDSPPLPQ 1066


>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 840

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 184 GITWKVTDGVLPALAGSLILFR 119
           G+ W+V  GVLP+LA S+  FR
Sbjct: 31  GVRWRVNLGVLPSLASSIDEFR 52


>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
           SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
           profile PF00240: Ubiquitin family
          Length = 415

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 168 TFQVIPSEISPTQWAVYEEMEDLPEGISI 254
           +F V+  EI+  Q  + EEM DLP  +++
Sbjct: 263 SFDVVKEEITGVQGIIEEEMNDLPVSVAV 291


>At1g48360.1 68414.m05402 expressed protein ; expression supported
           by MPSS
          Length = 688

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 156 FYPHWLVP*FCFVLFRVYLIFVQLHPNSPFYLLKIVLQCFH*SDHYQYW 10
           F   W+     F+   V + F     N   YLL+ +L CF+      YW
Sbjct: 345 FTAPWVNSKIIFIFLPVEICFFGFRYNRAVYLLRRLLSCFNCDGRRGYW 393


>At1g47390.1 68414.m05246 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 252 WISPRVNLPFL--HTLPIESD*FRSESLGK*PMVFYPHWLVP 133
           WI P+VN P L  + +  E D  + ES G   +V YP+ L P
Sbjct: 117 WIKPKVNQPSLCFNGIGYEYDNMKLESSGYKTLVSYPNELDP 158


>At1g19870.1 68414.m02492 calmodulin-binding family protein contains
           Pfam profile: PF00612 IQ calmodulin-binding motif
          Length = 794

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 12  NTDSDPTSESIEERSSGDKMANLDEVEQKSNKPE-RVRNRIREPASAGKTPSVTFQVIPS 188
           +T +DP S ++E +SSGDK        +KS K    + + + E   A +T       +  
Sbjct: 20  DTSADPNSTALENKSSGDKRG--WSFRKKSGKQRGLITSVVSETTPASRTRETLESALLK 77

Query: 189 EISPTQWAVYEEME 230
             SP    V E+ +
Sbjct: 78  SPSPDNNNVSEKQQ 91


>At5g62550.1 68418.m07850 expressed protein 
          Length = 487

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +3

Query: 27  PTSESIEERSSGDKMANLDEVEQKSNK-PERVRNRIREPASAGKTPSVTFQVIPSEISPT 203
           PTS S   +S    + +L EV+ K ++   R  N    P S+    SVT + +    S T
Sbjct: 88  PTSNS-SVKSVSSSVTSLSEVKPKRSRIVPRSFNETTTPVSSNLRSSVTRKKVEDLSSST 146

Query: 204 QWAVYEEMEDLPEGISIKMPVIK 272
            W  + ++ +     SI +   K
Sbjct: 147 YWLTHIKLAESVAKHSISLGFFK 169


>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
           protein contains Pfam profile PF03371: PRP38 family
          Length = 355

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 18  DSDPTSESIEERSSGDKMANLDEVEQKSNKPERVRNRIRE 137
           + D   E  +E + G    + DE++Q+   PER R R R+
Sbjct: 185 EDDFEEEEEKEENEGIADGSEDEMDQRRKSPERERERDRD 224


>At1g70450.1 68414.m08105 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 394

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 105 KPERVRNRIREPASAGKTPSVTFQVIPSEISPTQWAVYEEMEDLPEGIS 251
           K ++ +     P+S+   PSV   V+ S    T +  YEE+ED+ EG S
Sbjct: 5   KNQKKKETADSPSSSPTAPSVDSAVMGS--GQTHFT-YEELEDITEGFS 50


>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
           GTP-binding protein SP:Q99ME9 from [Mus musculus]
          Length = 671

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 57  SGDKMANLDEVEQKSNKPERVRNRIREPA-SAGKTPSVTFQVIPSE 191
           +G+   ++D+ EQ+SNK +RVR++ R  + S  ++     +V+P E
Sbjct: 571 AGNDAMDVDD-EQQSNKKQRVRSKSRAMSISRSQSRPPAHEVVPGE 615


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,870,212
Number of Sequences: 28952
Number of extensions: 394193
Number of successful extensions: 1056
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)