Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30351
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    27   2.4  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   2.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   3.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   5.5  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   7.3  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   9.6  

>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 316 RRSLFVT-FFTPGSLLFIHEGSLPWSQPISFLR 221
           R+ L+ T   TPGS+ F+  G+  +++ + FLR
Sbjct: 54  RQKLYTTSILTPGSIFFLPHGTRIYNRLVDFLR 86


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
 Frame = +3

Query: 291 KKVTNKEXXXXXXXXXXXXXTPKNAVMVINEMIPKEQIANNFKVE-PNPNKHFKQTTPTY 467
           K+ TN +             + K +  + N  + + +   NFK+E P P+  F+   P  
Sbjct: 104 KESTNLDDLNMSEEPKHHDSSNKESTNLDNSNMDESENQKNFKIEEPKPSGDFRNEGPKQ 163

Query: 468 CADLTID 488
           C D  I+
Sbjct: 164 CDDSKIE 170


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +1

Query: 19  YMHTIEKKSHISHLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVG 174
           Y + I      +H+  ++L H  + +N+F L    A +D      ++  C+G
Sbjct: 287 YGYEININESTNHVDSSYLPHPIQLSNYFTLPSSCAQADAACQCGDNCECLG 338


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 424 SQTRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQK 576
           SQT +S + K  P+T++ S   AP        A S Q G + S ++   Q+
Sbjct: 225 SQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQ 275


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 237 GWLQGRLPSWMKSKLP 284
           G +  RLPSW+K+K+P
Sbjct: 64  GSIHKRLPSWLKTKVP 79


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 4   VRKH*YMHTIEKKSHISHLVMAFLQHKGRAANHFNLEMDSAV 129
           V K    H I+   ++ HLV   LQ+  R   HF+   D  +
Sbjct: 272 VAKEKLTHIIKYDDYLVHLVHETLQYSVRLEQHFHYTQDPLI 313


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 802 GPPPFGPAQTGPRRRVPRIP 743
           GPP + PA T P   +P IP
Sbjct: 139 GPPLYHPAATAPSEFMPSIP 158


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 804 PGPRRLAPPKRAPEGVFLEFRKNWPAAGAG 715
           P P    P + AP G+  +  KNW   G G
Sbjct: 426 PEPETFNPDRWAPNGLAEQSPKNWMVFGNG 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,112
Number of Sequences: 5004
Number of extensions: 74808
Number of successful extensions: 208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)