Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30351
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 33 0.20
07_03_1160 - 24430240-24431268 33 0.36
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 32 0.62
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 31 0.82
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 31 1.4
01_06_0695 - 31292622-31293317 30 2.5
10_02_0070 - 4919843-4919913,4921086-4921455 29 3.3
07_03_0901 + 22433920-22434048,22434201-22434872 29 3.3
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 29 4.4
09_02_0571 + 10793000-10793782 29 4.4
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.4
01_06_0528 + 30024338-30025135 29 4.4
01_05_0605 + 23603544-23604329 29 4.4
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 29 4.4
11_06_0610 - 25449085-25453284 29 5.8
10_08_0556 - 18739091-18739399,18740126-18740325,18740453-187405... 29 5.8
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695... 29 5.8
07_03_0849 + 21997758-21998423 29 5.8
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 5.8
04_04_0618 - 26647966-26648274,26648370-26648572,26648677-266487... 29 5.8
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037... 29 5.8
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636... 28 7.6
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 439 STSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQR 561
S S PPR + SP +P + ++ SP+RGR SR R
Sbjct: 41 SPSPPLPPRKRRLSPTPSPTRRSSRSRSRSPRRGRSRSRSR 81
>07_03_1160 - 24430240-24431268
Length = 342
Score = 32.7 bits (71), Expect = 0.36
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 797 PAVWPRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTP 675
P + P+P+ PP+ C K +PP P G +P P P
Sbjct: 248 PDMPPKPDQPPQPCPDGPPKPDQPPQPNPNGPPKPDQPPQP 288
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 785 PRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTP 675
P+P+ PP+ + K +PP P G +P P P
Sbjct: 266 PKPDQPPQPNPNGPPKPDQPPQPNPNGPSKPDQPPRP 302
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 31.9 bits (69), Expect = 0.62
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 278 TTGSEESDKQGTSPQTEPAPQATPHAQECSHGDQRNDS*GADCQ*FQSGAKPEQA 442
T GSEESD + P+P A ++ C+ Q+N D + +S KP A
Sbjct: 527 TKGSEESDNNDATVPDFPSPGAN-YSTPCAPSKQQNSELHGDSEILKSTTKPSSA 580
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 31.5 bits (68), Expect = 0.82
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = -2
Query: 772 GPRRRVPRIPKKLAGRRGRKQGAILNPSPFPLRRTALCRAKDASWNHGQRLLFGGLGAAL 593
GPR R+ P++ GR R++ +L+ S LR T + DA +G+ LL GG A L
Sbjct: 56 GPRLRLLASPRRRHGR--RRRALLLSTSGCALRLTHRSSSADAVRVNGRPLLRGGCPADL 113
Query: 592 S 590
+
Sbjct: 114 A 114
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 785 PRPNGPPKACSSNSEKIGRP-PGPETRGNFEPFPLPTPK 672
P P PP A ++ + G+P P P+ + P P P PK
Sbjct: 3 PNPPPPPAAATATYRRRGKPKPKPKRKAAKPPSPSPPPK 41
>01_06_0695 - 31292622-31293317
Length = 231
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 779 PNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPK 672
PN P + SS+S P P R P P P P+
Sbjct: 16 PNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPR 51
>10_02_0070 - 4919843-4919913,4921086-4921455
Length = 146
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +2
Query: 632 MIPAGVLRSTQSCSSEWEGGRVQNCPLFPAPAAGQFFRNSRNTP--SGARLGGAKRRGPG 805
M P G RS + + R CP P F S++ P G +GG RG G
Sbjct: 69 MFPPGQTRSRSASRTCCSRRRTPLCPWLPCSCIASFLPGSQDDPPFRGLHVGGYTGRGEG 128
>07_03_0901 + 22433920-22434048,22434201-22434872
Length = 266
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G + PS+++ + PG
Sbjct: 48 WYGPDRVKYLGPFSAQTPSYLRGEFPG 74
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 728 AGQFFRNSRNTPSGARLGGAKRRGPG 805
AG R ++TP G R G++ RGPG
Sbjct: 296 AGGSRRGEQSTPRGGRASGSRDRGPG 321
>09_02_0571 + 10793000-10793782
Length = 260
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R +G L G PS++ + PG
Sbjct: 44 WYGADRVLYLGPLSGEPPSYLTGEFPG 70
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 794 AVWPRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPK 672
A P P PPKA G PP P +G P P P PK
Sbjct: 323 AAAPPPPPPPKAAPPPPPPKGPPPPPPAKG---PPPPPPPK 360
>01_06_0528 + 30024338-30025135
Length = 265
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R +G L G PS++ + PG
Sbjct: 49 WYGADRVLYLGPLSGEPPSYLTGEFPG 75
>01_05_0605 + 23603544-23604329
Length = 261
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R +G L G PS++ + PG
Sbjct: 45 WYGADRVLYLGPLSGEPPSYLTGEFPG 71
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 445 SSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRAS--RQRHHHQK 576
S+ P ++ +SP +P + R + S +R +S R RHHH K
Sbjct: 35 SASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHK 80
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 797 PAVWPRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPKNS 666
P + P P G K+ S++ + PP E+ EP P PTPK+S
Sbjct: 887 PEISPPPEG--KSPPSHTPESSSPPSKES----EPPPTPTPKSS 924
>10_08_0556 -
18739091-18739399,18740126-18740325,18740453-18740501,
18741151-18741285
Length = 230
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 391 GIISLITMTAFLGVRSRLRCWFCLRRRSLFVTFFTPGSLLFIHEGSLPW 245
GI +L ++ +++G+ + C + ++ FVTFF PG+ + +LPW
Sbjct: 106 GIANLYSLHSWVGLGTI--CLYGVQWIFGFVTFFFPGASPSLRRAALPW 152
>08_02_0925 -
22668875-22668889,22668942-22669018,22669383-22669500,
22669662-22669685,22670067-22670360,22670456-22670563,
22671098-22671946
Length = 494
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 651 FALHKAVLRSGKGEGFKIAPCFRPRRPANFFGIRGTRLRGPVWAG-PNGG 797
+ LH A+ G+ + CF P P F G L V+ G P G
Sbjct: 140 YTLHPAIFACGQLTSLHLERCFLPTAPEGFGGFPNLTLLSLVYVGLPENG 189
>07_03_0849 + 21997758-21998423
Length = 221
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 421 WSQTRT-STSSKRPPRTAQTSPLTAPCTKDR----*EQAASPQRGRRASRQR 561
WS T S S R ++ ++ TAPC++ R A SP RRA +R
Sbjct: 80 WSSTSALSLDSARSSSSSSSTTTTAPCSRSRSLSSLSDALSPPAARRAPERR 131
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -2
Query: 787 GPAQTGPRRRVPRIPKKLAGRRGRKQGAILNPSP 686
GP++ PRRRV PK +A +K N SP
Sbjct: 136 GPSKAAPRRRVSPEPKGIAYSTPKKSALGANASP 169
>04_04_0618 -
26647966-26648274,26648370-26648572,26648677-26648725,
26649167-26649256,26649767-26649916
Length = 266
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 304 FVTFFTPGSLLFIHEGSLPW 245
FV FF PG+ + G+LPW
Sbjct: 169 FVAFFYPGAAPHVRRGALPW 188
>04_04_0233 +
23801944-23802598,23802914-23803047,23803548-23803730,
23804145-23804318
Length = 381
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -1
Query: 800 APAVWPRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTP 675
A WP P P SS +G PP P + +P P P P
Sbjct: 4 ASRTWPPPTPSPPPFSSRPRVVGPPPPPPS----DPPPPPPP 41
>09_03_0046 +
11862923-11863112,11863225-11863406,11863522-11863634,
11863894-11864140,11864333-11864452,11864601-11864604,
11864800-11864846,11864992-11865068,11865381-11865431,
11865519-11865567,11865694-11865718,11866226-11866344
Length = 407
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 704 CPLFPAPAAGQFFRNSRNTPSGARLGGAKRRGP 802
CP P ++ + F +S + +GA LGGA P
Sbjct: 55 CPYLPRLSSARSFSSSTSCSAGASLGGAVSTSP 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,766,425
Number of Sequences: 37544
Number of extensions: 635872
Number of successful extensions: 2800
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -