Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30351
(809 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014) 33 0.27
SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7) 31 1.1
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 30 1.9
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 30 1.9
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_28246| Best HMM Match : M (HMM E-Value=0.0007) 29 3.4
SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13) 29 4.5
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 4.5
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0) 29 5.9
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5) 29 5.9
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 29 5.9
SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05) 29 5.9
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 28 7.8
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 28 7.8
>SB_33219| Best HMM Match : RhoGAP (HMM E-Value=0.0014)
Length = 399
Score = 33.1 bits (72), Expect = 0.27
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -1
Query: 800 APAVWPRPNGPP---KACSSNSEKI---GRPPGPETRGNFEPFPLPTPKNSFV*SEGRQ 642
APA PRP P K S+++ + GRPP P TRG PLP PK V +E Q
Sbjct: 218 APAPPPRPCPAPRVRKTIPSSTDSLPRPGRPPSPSTRG---MKPLPPPKKPDVVAEKDQ 273
>SB_24292| Best HMM Match : LTXXQ (HMM E-Value=1.7)
Length = 288
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = -2
Query: 799 PPPFGPAQTGPRRR--VPRIPKKLA---GRRGRKQGAILNPSPFPLRRTALCRAKDAS 641
PP F P + PRRR P+ ++++ R G QG I N + P RR L A A+
Sbjct: 37 PPSFTPRSSIPRRRSDTPKKRRRISVPRRRAGSAQGRITNKTKTPPRRANLLEAFTAT 94
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 755 SSNSEKIGRPPGPETRGNFEPFPLPTPK 672
S+ S + PP P TRG PLPTP+
Sbjct: 417 STTSTPVAPPPTPPTRGGSTKRPLPTPR 444
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 460 PRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQKDQE 585
PR A + T+ +K + +QAA P++ R+ASR+ + Q DQ+
Sbjct: 1196 PRQASSKTKTSKTSKPQNKQAARPKQARQASRKTNKPQ-DQD 1236
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 684 KGEGFKIAPCFRPRRPANFFGIRGTRLRGPVWAGPNGGGP 803
+G+G AP R R P +F G+ G R RGP GP GP
Sbjct: 810 RGQGPFGAPEDRGRGPRDFRGMDGPRFRGP--EGPQFRGP 847
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 412 ISKWSQTRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQKDQEMC 591
+++W+QTR+ T R Q + + P K AS QR + + H +K Q+ C
Sbjct: 375 LAEWAQTRSKTLRMRERYNEQPTAKSVPAAK-----GASQQRRHQRYQTMHVGEKHQQKC 429
>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 12 TLIHAYY*KKITHISSRYGVFTTQGSGRQSFQPRDGFCS 128
TL Y T+ YG FT+QG G+ Q DG CS
Sbjct: 328 TLARRYCGNSATYADGNYGRFTSQG-GQYFTQEEDGSCS 365
>SB_28246| Best HMM Match : M (HMM E-Value=0.0007)
Length = 1121
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 648 SFALHKAVLRSGKGEGFKIAPCFRPRRPAN 737
++ L V SG EG K+ P + PRRP N
Sbjct: 1009 TYGLFTGVKYSGLPEGTKVLPEYTPRRPVN 1038
>SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 430 TRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQK 576
T ++++ P++ ++S T+ +R A S G+R+S Q HHH +
Sbjct: 86 TNRTSAATSSPKSKRSSAATSSPKSERSSAATSSSTGKRSS-QLHHHPR 133
>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 412 ISKWSQTRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQKDQEMC 591
+++W+QTR+ T R Q + + P K AS QR + + H +K Q C
Sbjct: 581 LAEWAQTRSKTLRMRERYNEQPTAKSVPAAK-----GASQQRRHQRYQTMHVGEKHQRKC 635
>SB_34676| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-13)
Length = 1012
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 412 ISKWSQTRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQKDQEMC 591
+++W+QTR+ T R Q + + P K AS QR + + H +K Q C
Sbjct: 246 LAEWAQTRSKTLRMRERYNEQPTAKSVPAAK-----GASQQRRHQRYQTMHVGEKHQRKC 300
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 412 ISKWSQTRTSTSSKRPPRTAQTSPLTAPCTKDR*EQAASPQRGRRASRQRHHHQKDQEMC 591
+++W+QTR+ T R Q + + P K AS QR + + H +K Q C
Sbjct: 193 LAEWAQTRSKTLRMRERYNEQPTAKSVPAAK-----GASQQRRHQRYQTMHVGEKHQRKC 247
>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
Length = 1649
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 782 RPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPKNSFV 660
RPNG K CS+ S+K F PFP + + FV
Sbjct: 339 RPNGS-KCCSNTSQKASFAVSAVHAQTFSPFPCESSTSGFV 378
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 652 SLYTKLFFGVGRGKGSKLPLVSGPGGRPIFSEFEEHAFG 768
S +T+ F GVG+ KG+K+ + P P+ FG
Sbjct: 111 SKFTQCFDGVGKLKGTKVKIFVDPDREPVAQSVRRLPFG 149
>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
Length = 565
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 782 RPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPKNSFV 660
RPNG K CS+ S+K F PFP + + FV
Sbjct: 480 RPNGS-KCCSNTSQKASFAVSAVHAQTFSPFPCESSTSGFV 519
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 28.7 bits (61), Expect = 5.9
Identities = 34/149 (22%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Frame = +1
Query: 121 SAVSDEPRDVAEDAACVGQDNAPLQFDTNGMEGIEEKKLAGSKEDCLRG*KVNYRE*RK* 300
S +++P D A++ ++ P + E E KL ++ + K ++
Sbjct: 40 SLTTNKPEDNADEKPEDNPEDKPEDKTEDRPEDKPEDKLEDKPKENQQN-KPEDKQQTTP 98
Query: 301 QTRNVAADRTSTSGDSSRPRMQSW*-STK*FLRSRLPIISKWSQTRT-STSSKRPPRTA- 471
+T + +TS + R S S K ++ L K + ++ +TS KR P+T+
Sbjct: 99 KTSRKTSQKTSLNASRKTSRKTSLKRSLKTSPKTSLKTSRKTDRKKSRNTSPKRSPKTSS 158
Query: 472 QTSPLTAPCTKDR*EQAASPQRGRRASRQ 558
++SP T+P T + SP+ SR+
Sbjct: 159 KSSPKTSPKTSLKTSSKTSPKTSLNTSRK 187
>SB_15517| Best HMM Match : zf-CCHC (HMM E-Value=3.4e-05)
Length = 799
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 652 SLYTKLFFGVGRGKGSKLPLVSGPGGRPIFSEFEEHAFG 768
S +T+ F GVG+ KG+K+ + P P+ FG
Sbjct: 410 SKFTQCFDGVGKLKGTKVKIFVDPDREPVAQSVRRLPFG 448
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/75 (25%), Positives = 32/75 (42%)
Frame = +2
Query: 167 ASDKTMHHFSLTRMVWRESKKRNWLAPRKTAFVDEK*TTGSEESDKQGTSPQTEPAPQAT 346
A + H + V + SK+R PRK + S ++ +T P+P+ T
Sbjct: 1023 AKKERQSHSESPQRVTKSSKER----PRKRPRHQSRERRPSSSPPRRSRPQRTSPSPRRT 1078
Query: 347 PHAQECSHGDQRNDS 391
P + S G +R+ S
Sbjct: 1079 PEDRRRSRGSRRSPS 1093
>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -1
Query: 779 PNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPT 678
P P CSS+S PP P G P LPT
Sbjct: 313 PTRSPSGCSSDSTN--PPPSPRVSGAVPPLMLPT 344
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 805 TGPPPFGPAQTGPRRRVPRIPKKLAGRRGRKQGAILNPSPFPLRR 671
T PF P + P +PKK + +G + +PSP P ++
Sbjct: 266 TTAKPFPKMSLTPTPKKPPVPKKPVLTPAQLEGLLKSPSPLPKKK 310
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 427 QTRTSTSSKRPPRTA-QTSPLTAPCTKDR*EQAASPQRGRRASRQ 558
+T TSSK P+T+ ++SP T+P T + S + ASR+
Sbjct: 127 RTSPKTSSKTSPKTSPKSSPKTSPKTSSKTSLKTSQKTSLNASRK 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,796,010
Number of Sequences: 59808
Number of extensions: 628906
Number of successful extensions: 2380
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2372
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -