Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30351
(809 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 24 1.9
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 24 1.9
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 24 1.9
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 23 3.3
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 22 5.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 5.8
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 22 7.7
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 7.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 7.7
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 7.7
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 7.7
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 640 SWRPSLYTKLFFGVGRGKGSKLPLVSGP 723
+W +Y K FFG+ G + +P P
Sbjct: 252 AWTKVIYVKRFFGLPVGVTAAIPTSENP 279
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = +3
Query: 357 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 473
+N + ++ + K + + +P N+ K+T CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 640 SWRPSLYTKLFFGVGRGKGSKLPLVSGP 723
+W +Y K FFG+ G + +P P
Sbjct: 252 AWTKVIYVKRFFGLPVGVTAAIPTSENP 279
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = +3
Query: 357 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 473
+N + ++ + K + + +P N+ K+T CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 640 SWRPSLYTKLFFGVGRGKGSKLPLVSGP 723
+W +Y K FFG+ G + +P P
Sbjct: 252 AWTKVIYVKRFFGLPVGVTAAIPTSENP 279
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/39 (20%), Positives = 18/39 (46%)
Frame = +3
Query: 357 KNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTPTYCA 473
+N + ++ + K + + +P N+ K+T CA
Sbjct: 182 ENELRALSSLFSKGCLVGTWSPDPAINRRLKETYSNMCA 220
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 23.0 bits (47), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 4 VRKH*YMHTIEKKSHISHLVMAFLQ 78
++ H +HT EK H SH F+Q
Sbjct: 25 LKTHMRLHTGEKPYHCSHCDRQFVQ 49
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 22.2 bits (45), Expect = 5.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 381 EMIPKEQIANNFKVEPNPNKHFKQT 455
++I Q A+N ++EP P +QT
Sbjct: 173 DVIEVIQKAHNMELEPTPGNTLRQT 197
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 5.8
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +3
Query: 354 PKNAVMVINEMIPKEQIANNFKVEPNPNKHFKQTTP 461
PK++ IPK ++ +P PN Q +P
Sbjct: 356 PKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSP 391
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 21.8 bits (44), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 798 PRRLAPPKRAPEGVFLEF 745
P RL+ PK P+G L+F
Sbjct: 622 PARLSLPKGQPQGFPLQF 639
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 21.8 bits (44), Expect = 7.7
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = +1
Query: 31 IEKKSHISHLVMAFLQHKGRAA----NHFNLEMDSAVSDEPRDVAEDAACVGQDNAPLQF 198
++K SH + + ++ G + F + S EP +ACVG PL+
Sbjct: 143 VQKVSHTLYKLDEIIERNGDKPPLTYHQFQTVVASMDPPEPPVPTVTSACVGSAYTPLKE 202
Query: 199 DTNGMEGI 222
D + G+
Sbjct: 203 DHDDHYGV 210
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 7.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 646 RPSLYTKLFFGVGRGKGSKLPLVSGPGGRPIFSE 747
R +Y + G+G G S + G +PI E
Sbjct: 1432 RYQIYVTAYNGIGTGDPSDMLNTRTKGSKPIIPE 1465
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 265 HEGSLPWSQPISFLRFPPYH 206
H G+ Q + + RFPPY+
Sbjct: 65 HYGAAGSQQDMPYPRFPPYN 84
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.8 bits (44), Expect = 7.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 216 GNRRKEIGWLQG 251
G RRKE WL+G
Sbjct: 991 GKRRKEPPWLEG 1002
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,219
Number of Sequences: 438
Number of extensions: 6122
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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