Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30351
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50180.1 68416.m05486 hypothetical protein 34 0.097
At2g34430.1 68415.m04223 chlorophyll A-B binding protein / LHCII... 31 1.2
At1g29930.1 68414.m03657 chlorophyll A-B binding protein 2, chlo... 31 1.2
At1g29920.1 68414.m03656 chlorophyll A-B binding protein 165/180... 31 1.2
At1g29910.1 68414.m03655 chlorophyll A-B binding protein 2, chlo... 31 1.2
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 31 1.2
At2g34420.2 68415.m04220 chlorophyll A-B binding protein / LHCII... 30 1.6
At2g34420.1 68415.m04219 chlorophyll A-B binding protein / LHCII... 30 1.6
At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to... 29 2.8
At1g49320.1 68414.m05528 BURP domain-containing protein similari... 29 2.8
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 29 3.7
At1g23200.1 68414.m02898 pectinesterase family protein contains ... 29 4.8
At4g32750.1 68417.m04660 expressed protein 28 6.4
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 28 6.4
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote... 28 6.4
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 28 8.4
At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative s... 28 8.4
At4g05616.1 68417.m00870 hypothetical protein 28 8.4
At2g05100.1 68415.m00535 chlorophyll A-B binding protein / LHCII... 28 8.4
At2g05070.1 68415.m00529 chlorophyll A-B binding protein / LHCII... 28 8.4
At1g49270.1 68414.m05524 protein kinase family protein contains ... 28 8.4
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 34.3 bits (75), Expect = 0.097
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 799 PPPFGPAQTGPRRRVPRI-PKKLAGRRGRKQGAILNPSPFPLRRTAL 662
PPP P + GPR R+ + P + R RKQ ++ P P PLR A+
Sbjct: 36 PPPPPPPRLGPRLRLRLLPPPRQQLLRLRKQQPLVLPEPLPLRPRAI 82
>At2g34430.1 68415.m04223 chlorophyll A-B binding protein / LHCII
type I (LHB1B1) identical to photosystem II type I
chlorophyll a/b binding protein [Arabidopsis thaliana]
GI:16366
Length = 266
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 162 SLRRTRQCTTSV*HEWYGGNRRKEIGWLQGRLPSWMKSKLPG 287
++R+ + T WYG +R K +G G PS++ + PG
Sbjct: 34 TMRKASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPG 75
>At1g29930.1 68414.m03657 chlorophyll A-B binding protein 2,
chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B)
identical to SP|P04778 Chlorophyll A-B binding protein
2, chloroplast precursor (LHCII type I CAB-2) (CAB-140)
(LHCP) {Arabidopsis thaliana}
Length = 267
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G G PS++ + PG
Sbjct: 50 WYGSDRVKYLGPFSGESPSYLTGEFPG 76
>At1g29920.1 68414.m03656 chlorophyll A-B binding protein 165/180,
chloroplast / LHCII type I CAB-165/180 identical to
SP|P04777 Chlorophyll A-B binding protein 165/180,
chloroplast precursor (LHCII type I CAB-165/180) (LHCP)
{Arabidopsis thaliana}; similar to photosystem II type I
chlorophyll a /b binding protein GI:16364 from
[Arabidopsis thaliana]
Length = 267
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G G PS++ + PG
Sbjct: 50 WYGSDRVKYLGPFSGESPSYLTGEFPG 76
>At1g29910.1 68414.m03655 chlorophyll A-B binding protein 2,
chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A)
identical to SP|P04778 Chlorophyll A-B binding protein
2, chloroplast precursor (LHCII type I CAB-2) (CAB-140)
(LHCP) {Arabidopsis thaliana}
Length = 267
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G G PS++ + PG
Sbjct: 50 WYGSDRVKYLGPFSGESPSYLTGEFPG 76
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 100 HFNLEMDSAVSDEPRDVAEDAACVGQDNAPLQFDTNGMEGIEE 228
H+NL V P DV ED A G+D+A + + +EE
Sbjct: 997 HYNLRRKKTVDQVPADV-EDNAAAGEDDADIAASAPSKDTVEE 1038
>At2g34420.2 68415.m04220 chlorophyll A-B binding protein / LHCII
type I (LHB1B2) identical to GB:X64460 photosystem II
type I chlorophyll a/b binding protein [Arabidopsis
thaliana] GI:16364
Length = 251
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G G PS++ + PG
Sbjct: 48 WYGSDRVKYLGPFSGEPPSYLTGEFPG 74
>At2g34420.1 68415.m04219 chlorophyll A-B binding protein / LHCII
type I (LHB1B2) identical to GB:X64460 photosystem II
type I chlorophyll a/b binding protein [Arabidopsis
thaliana] GI:16364
Length = 265
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 WYGGNRRKEIGWLQGRLPSWMKSKLPG 287
WYG +R K +G G PS++ + PG
Sbjct: 48 WYGSDRVKYLGPFSGEPPSYLTGEFPG 74
>At5g64700.1 68418.m08132 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]; contains Pfam profile PF00892:
Integral membrane protein
Length = 359
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = -2
Query: 427 GSTLKLLAICSLGIISLITMTAFLGVRSRLRCWFCLRRRSLFVTFFTPGSLLF 269
G L+L+A+ G I +T GV L+ W +R +F++ FTP SLLF
Sbjct: 249 GWNLRLVAVIYCGFI--VT-----GVAYYLQSWVIEKRGPVFLSMFTPLSLLF 294
>At1g49320.1 68414.m05528 BURP domain-containing protein similarity
to SP|Q08298 Dehydration-responsive protein RD22
precursor {Arabidopsis thaliana}; contains Pfam profile
PF03181: BURP domain
Length = 280
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 86 VGPPI--ISTSRWILQYLMSRVMSPRMQPASDKTMHHFSLTRMVW 214
VGP + + TS W ++ +V+ +M+P S H F L +VW
Sbjct: 235 VGPAVCHMDTSTWDADHVAFKVL--KMEPRSAPVCHFFPLDNIVW 277
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 LVRKH*YMHTIEKKSHISHLVMAFLQHKGRAANHFNLEMDSAVSDEPRDVAEDAACVGQ- 177
LV++ M +E + L L+ + A F E VSD P + + Q
Sbjct: 379 LVKREEEMKELEAGIEVYRLRYGLLREERGEAEEFLDEETKPVSDLPVCSSNHEEDLEQM 438
Query: 178 -DNAPLQFDTNGMEGIEEKKLAGSKEDCL 261
D+A NG+ IEE+K GS++D L
Sbjct: 439 KDSAEDSIGNNGVMIIEEEKENGSRKDML 467
>At1g23200.1 68414.m02898 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 554
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 270 SSTKAVFLGASQFLFFDSL--HTIRVKLKWCIVLSDAGCILGDITRLIRYCRIHLEVEMI 97
SS +VF S + D+L H+ R L+ C + I GD T +++ C I+ M
Sbjct: 364 SSDFSVFYACSFKGYQDTLYLHSSRQFLRNCNIYGTVDFIFGDATAILQNCNIYARKPMS 423
Query: 96 G 94
G
Sbjct: 424 G 424
>At4g32750.1 68417.m04660 expressed protein
Length = 293
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 318 GDVPCLSLSSLPVVYFSSTKAVFLGASQFLFFDSLHTIRVKLKWCIVLSDAGCIL 154
G V CLS+ ++ A+FLG+S S V L WC +S G ++
Sbjct: 153 GGVRCLSILNVVFAIIYGLLAIFLGSSLLTLGSS---CSVPLFWCYEISSWGLVI 204
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -1
Query: 773 GPPKACSSNSEKIGRPPGPETRGNFEPFPLPTPKNSFV*SEGRQLESWAAAPLRRARCCS 594
G + SS+ I R G R P P P P + E ++ SW PLR+ CS
Sbjct: 699 GQTQIPSSDPLPILRGSGSGGREENTPLPPPLPHQNLFIQED-EMSSWPHHPLRQDYLCS 757
Query: 593 Q 591
+
Sbjct: 758 E 758
>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1011
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 424 STLKLLAIC-SLGIISLITMTAFLGVRSRLRCWFCLRRRSLFVTFFTPGSLLFIHE 260
S LK +AI S+GI L+ + + S + CWF RR++ P L HE
Sbjct: 638 SHLKKVAILVSIGIALLLLLV----IASMVLCWFRKRRKNQQTNNLVPSKLEIFHE 689
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 502 KDR*EQAASPQRGRRASRQRHHHQKDQEMC*EQHXXXXXXXXXHDSSW 645
KDR E++ R R R+R H++++E H HD W
Sbjct: 626 KDR-ERSREHVRDRERERERDRHREERERYGGDHRTRHRDEPEHDEEW 672
>At5g47210.1 68418.m05821 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 357
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/34 (52%), Positives = 19/34 (55%)
Frame = +2
Query: 707 PLFPAPAAGQFFRNSRNTPSGARLGGAKRRGPGF 808
P PAP + Q R SRN P G R GG RG GF
Sbjct: 44 PTKPAPPS-QAVRESRNAPQGGR-GGTGGRG-GF 74
>At4g05616.1 68417.m00870 hypothetical protein
Length = 346
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +3
Query: 384 MIPKEQIANNFKVEPNPNKHFKQTTPTYCADLTIDGTVYQG*VRTS 521
M + +AN VE NPN + P A + QG +RT+
Sbjct: 1 MTNNQVLANTVDVEGNPNHPVQTNAPEVAAPTQLQAATSQGQLRTT 46
>At2g05100.1 68415.m00535 chlorophyll A-B binding protein / LHCII
type II (LHCB2.1) (LHCB2.3) identical to Lhcb2 protein
[Arabidopsis thaliana] GI:4741948, GI:4741944; contains
Pfam profile PF00504: Chlorophyll A-B binding protein
Length = 265
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 162 SLRRTRQCTTSV*HEWYGGNRRKEIGWLQGRLPSWMKSKLPG 287
++RRT + T WYG +R K +G PS++ + PG
Sbjct: 36 TMRRTVKSTPQ--SIWYGPDRPKYLGPFSENTPSYLTGEYPG 75
>At2g05070.1 68415.m00529 chlorophyll A-B binding protein / LHCII
type II (LHCB2.2) identical to Lhcb2 protein
[Arabidopsis thaliana] GI:4741946; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 265
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 162 SLRRTRQCTTSV*HEWYGGNRRKEIGWLQGRLPSWMKSKLPG 287
++RRT + T WYG +R K +G PS++ + PG
Sbjct: 36 TMRRTVKSTPQ--SIWYGPDRPKYLGPFSENTPSYLTGEYPG 75
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 806 NRAPAVWPRPNGPPKACSSNSEKIGRPPGPETRGNFEPFPLPTP 675
N PA P P PP SSN ++ PP + + P P +P
Sbjct: 9 NSPPA--PPPPSPPSPPSSNDQQTTSPPPSDNQETTSPPPPSSP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,233
Number of Sequences: 28952
Number of extensions: 447307
Number of successful extensions: 1577
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1573
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -