Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30350
         (884 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.8  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   3.2  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   4.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   9.7  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   9.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.7  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 60  STSSTGVASPQDLSTNGAPPRSTPP 84


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
           S  +T V SP+   T  +PP  TPP
Sbjct: 104 STSSTGVASPQDLSTNGAPPRSTPP 128


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 362 GQKLRPHGTEPIPVSWNRPPAS 297
           G  LR +G EP+P +   PP S
Sbjct: 197 GYGLRNYGPEPVPSTPYPPPGS 218


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/38 (18%), Positives = 18/38 (47%)
 Frame = +3

Query: 330 WLSTVRSQLLPSSVLTWMPLHSNCSTEECVLLSSSSKD 443
           W +  R +L   + +TW P +     ++ ++  S  ++
Sbjct: 134 WFANARRRLKKENKMTWEPKNKTDDDDDALVSDSDDRE 171


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 827 LLFVP*KVPVDFYSSISVRRSLNL 756
           LLFVP +VP D + +   + ++ L
Sbjct: 329 LLFVPRRVPFDLFENKKRKNNIKL 352


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 272 RHAIQTTDVDGWSDTFVEQLSF 207
           R+A+Q T ++ W     +Q++F
Sbjct: 393 RNAVQETGIENWWSDGNQQIAF 414


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 387 LHSNCSTEECVLLSSSSKDNMCPWLLRNRS 476
           L  + S E C L+   +     PW  R+ S
Sbjct: 172 LRQSSSLEHCTLIGEDNISAKNPWFPRHAS 201


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 180 RSRWWECKLTHHRLGFQ*RVKQSGSHH 100
           + RW +C   +  LGF+  V    S H
Sbjct: 120 KKRWSQCMYMYFLLGFRYLVNDELSAH 146


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 180 RSRWWECKLTHHRLGFQ*RVKQSGSHH 100
           + RW +C   +  LGF+  V    S H
Sbjct: 434 KKRWSQCMYMYFLLGFRYLVNDELSAH 460


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,167
Number of Sequences: 336
Number of extensions: 4873
Number of successful extensions: 29
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)