Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30350
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   146   3e-36
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    51   3e-07
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    28   2.0  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   3.6  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    27   3.6  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    26   6.2  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   6.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   6.2  
SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5 |Schizo...    26   8.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   8.2  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   8.2  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  146 bits (355), Expect = 3e-36
 Identities = 70/75 (93%), Positives = 72/75 (96%)
 Frame = +3

Query: 30  YPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLE 209
           YPGDVFYLHSRLLERAAKMS K GGGSLTALPVIETQ GDVSAYIPTNVISITDGQIFLE
Sbjct: 322 YPGDVFYLHSRLLERAAKMSPKHGGGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLE 381

Query: 210 TELFYKGIRPAINVG 254
           +ELF+KGIRPAINVG
Sbjct: 382 SELFFKGIRPAINVG 396



 Score =  136 bits (330), Expect = 3e-33
 Identities = 66/85 (77%), Positives = 76/85 (89%)
 Frame = +2

Query: 254 LSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELL 433
           LSVSRVGSAAQ KAMKQVAG +KL LAQYREVA+FAQFGSDLDA T+  L+RG+RLTELL
Sbjct: 397 LSVSRVGSAAQVKAMKQVAGQIKLFLAQYREVASFAQFGSDLDAGTRATLDRGLRLTELL 456

Query: 434 KQGQYVPMAIEEQVAIIYCGVRGHL 508
           KQ QY P+A+EEQV +IYCGV+G+L
Sbjct: 457 KQPQYSPLAVEEQVPLIYCGVKGYL 481



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +1

Query: 511 KLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLK 642
           K+   ++  FE +F  ++++S   ++  I K+G ++  ++ SLK
Sbjct: 483 KIPVDRVVEFEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLK 526


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 27/75 (36%), Positives = 43/75 (57%)
 Frame = +3

Query: 27  GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
           GYPG ++   S + ERA ++  +   GS+T +P++     D++  IP     IT+GQIF+
Sbjct: 300 GYPGYMYTDLSTIYERAGRVEGR--NGSITQIPILTMPNDDITHPIPDLTGYITEGQIFV 357

Query: 207 ETELFYKGIRPAINV 251
           + +L    I P INV
Sbjct: 358 DRQLHNNAIYPPINV 372


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 538 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKEDRHR 657
           +E   T+ + TS   L ST+  DG+   + D  L+EDR R
Sbjct: 315 YETYRTEKLSTSQLLLDSTVGLDGKNLSQHDQVLREDRLR 354


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 342 VRSQLLPSSVLTWMPLHSNCSTEECVLLSSSSKDNMCP-WLLRNRSPSFT 488
           +R    P   L W PLH         LL+S SKDN    W ++ R+  FT
Sbjct: 216 LRRHTKPIMALCWQPLHL-APDSGPYLLASGSKDNTVRIWNVKLRTLLFT 264


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 287 TKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRG--MRLTELLKQGQYVPMA 460
           T+  +   G +  E   Y  +  FA+  +D+D   +QL+  G   ++T+L  + +     
Sbjct: 349 TQIEEPFGGELTFENPFYTTLQCFAENSADMDDNLRQLIKSGDTEKMTDLFSKSRLYRYF 408

Query: 461 IEEQVAI 481
            E  +A+
Sbjct: 409 FETSIAV 415


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 856 FKYPPLEG*NYYSSHEKYL 800
           +KYPP  G +  S HEKYL
Sbjct: 309 WKYPPKWGNDLSSEHEKYL 327


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 224 QRYPTSHQRRLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDA 385
           +RY  S    L  + +   A + + K++AGS+  EL    E+  F Q  +DL A
Sbjct: 376 RRYSKSSTLVLPETNIRKLANSYSQKKIAGSVIEELTTASEL-FFKQIANDLSA 428


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 596 SPKTVRSPPSLTPP*KKIVTDFLATFNQ 679
           SPK  + PPS T   K  + D L  FNQ
Sbjct: 372 SPKPAQKPPSPTIHTKAALADILDIFNQ 399


>SPBC725.15 |ura5||orotate phosphoribosyltransferase Ura5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -3

Query: 675 LKVARKSVTIFFQGGVRLGGDLTVFGDRGEQTLVA---SFDVLSKFLLEGSDFGGVQLVR 505
           LK  RKS   F  G    G DL    +   +T++A    FDV+     +G     +  V+
Sbjct: 24  LKSGRKSPYFFNSGNFTHGADLCALAEAYAETIIAMNVDFDVIFGPAYKGISLAAITAVK 83


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 511 CEVTADTAVNDGDLFLNSHGHILSLLEE 428
           CE T DT +   D  L +HG  LSL  E
Sbjct: 754 CEETMDTVIKLKDGELKAHGLFLSLRSE 781


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 496 DTAVNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQVRTEL 362
           D  ++ G+   + +  I+SLL+ELS   S  E    S +Q+ +E+
Sbjct: 65  DAKLSMGEKMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,802,900
Number of Sequences: 5004
Number of extensions: 79288
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)