Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30350
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 47 2e-05
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 46 3e-05
05_05_0065 - 22069798-22069890,22070878-22071160,22071240-220713... 31 1.6
05_06_0031 + 25065997-25066710 29 3.8
01_04_0047 - 15408802-15409068,15409418-15409478,15409516-154096... 29 3.8
07_03_1139 + 24254662-24255306 29 6.6
03_01_0545 - 4086692-4087591 29 6.6
02_02_0604 - 12064451-12065683,12065729-12065827,12065858-120659... 29 6.6
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 28 8.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 27 GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
GYPG ++ + + ERA ++ + GS+T +P++ D++ P IT+GQI++
Sbjct: 339 GYPGYMYTDLATIYERAGRIEGR--SGSITQIPILTMPNDDITHPTPDLTGYITEGQIYI 396
Query: 207 ETELFYKGIRPAINV 251
+ +L + I P INV
Sbjct: 397 DRQLHNRQIYPPINV 411
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 27 GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
GYPG ++ + + ERA ++ + G S+T +P++ D++ P IT+GQI++
Sbjct: 309 GYPGYMYTDLATIYERAGRIEGRKG--SITQIPILTMPNDDITHPTPDLTGYITEGQIYI 366
Query: 207 ETELFYKGIRPAINV 251
+ +L + I P INV
Sbjct: 367 DRQLHNRQIYPPINV 381
>05_05_0065 -
22069798-22069890,22070878-22071160,22071240-22071335,
22071456-22071558,22071633-22071693,22071816-22071887,
22072315-22072383,22072459-22072482,22073278-22073316,
22073862-22073951,22074063-22074095
Length = 320
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Frame = +1
Query: 529 ITAFEKEFTQHI-KTSHQGLL--STIAKDGQITPESDASLKEDRHRL 660
+T+F + FT+ +T+ LL ST KDG++ E D+ LKE+ H+L
Sbjct: 233 VTSFVEIFTEMPDRTNGVPLLPLSTREKDGRLKEEKDSRLKEEFHKL 279
>05_06_0031 + 25065997-25066710
Length = 237
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 152 VSLHSHQRDLHH*WTDLLGN*AVLQRYPTSHQRRLSVSRVGSAA 283
+++ + LHH W LG+ A + P RR S+ VGS A
Sbjct: 80 LTVRRRRPSLHHRWDGFLGDGAASGQKPLFSARRSSILGVGSGA 123
>01_04_0047 -
15408802-15409068,15409418-15409478,15409516-15409626,
15409707-15409958,15410044-15410270,15410971-15411230,
15411373-15412279,15412370-15412567
Length = 760
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Frame = +2
Query: 416 RLTELLKQGQYVPMAIEEQVAIIYCGVRGHLTSWTP------PKSLPSRRNLLNTSKLAT 577
++ E + GQ+VP +Q +YCGV T WT P+ P+ + +++ T
Sbjct: 337 QIVEKERSGQFVPRRERDQ---LYCGVGDRRTLWTSENPTAFPRLFPNGQQPTQSAQQTT 393
Query: 578 RVCSPRSPKTVRSPP 622
V P S +V++ P
Sbjct: 394 NV--PSSVGSVQTTP 406
>07_03_1139 + 24254662-24255306
Length = 214
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 491 GVRGHLTSWTPPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLT 631
G HL + TPP P + +S ++ +C P++P P T
Sbjct: 114 GRASHLVAMTPPPHKPPDAAAVASSHDSSALCCPKTPPPAHRPDPAT 160
>03_01_0545 - 4086692-4087591
Length = 299
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 488 CGVRGHLTSWTPP-KSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTP 634
CGVRG + PP + PSR N ++ + +P + SP TP
Sbjct: 150 CGVRGSMPVGAPPTAAAPSRGNRRGRRRVRHAHAAATAPLMMTSPSPRTP 199
>02_02_0604 -
12064451-12065683,12065729-12065827,12065858-12065955,
12066782-12066924,12067233-12067729
Length = 689
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/69 (24%), Positives = 31/69 (44%)
Frame = +2
Query: 413 MRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLTSWTPPKSLPSRRNLLNTSKLATRVCSP 592
M + + +G Y+P+ I ++ + +L WT + + +L+ KLAT +C
Sbjct: 361 MNVVGVKAEGYYIPLQIFPRLKDMTLSQLSNLEKWTESTAGEANTSLVTFPKLAT-LCIS 419
Query: 593 RSPKTVRSP 619
PK P
Sbjct: 420 DCPKLASVP 428
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 384 PLHSNCSTEECVLLSSSSKDNM---CPWLLRNRSPSFTAVSAVTSQAGPL 524
PL S+ S E+ ++ S+S + CPWLLR+ P VT AG +
Sbjct: 5 PLASSSSREKTMMSSNSLFQRLAKWCPWLLRD-EPKKPVKVLVTGAAGQI 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,972,305
Number of Sequences: 37544
Number of extensions: 602904
Number of successful extensions: 1758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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