Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30350
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.7  
AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic hor...    22   6.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 469 TGRHHLLRCPRSPHKLDPSKITAFEKEFTQHIKTSHQGLLSTIA 600
           TG+ +L +   S  KLD SK+TA  +E      T + G +  +A
Sbjct: 11  TGQPNLYKQDLS--KLDVSKLTALSREVISRQATINIGTIGHVA 52


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 475 DLFLNSHGHILSLLEELSKTHSSVEQLL 392
           DLF N H HI ++ + +  T+  + + +
Sbjct: 50  DLFDNVHNHIQNIFKIIKSTNEKITRYI 77


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 475 DLFLNSHGHILSLLEELSKTHSSVEQLL 392
           DLF N H HI ++ + +  T+  + + +
Sbjct: 33  DLFDNVHNHIQNIFKIIKSTNEKITRYI 60


>AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic
           hormone-I protein.
          Length = 52

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 248 RRLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSD 376
           +RL   R+GS +   +M  +   + LELA+ + +   AQ  ++
Sbjct: 1   KRLESKRIGSLSIVNSMDVLRQRVLLELARRKALQDQAQIDAN 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,360
Number of Sequences: 438
Number of extensions: 5880
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)