Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30350
(884 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 142 3e-34
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 46 3e-05
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 46 3e-05
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 46 3e-05
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 40 0.003
At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to b... 32 0.58
At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1) domain... 30 1.8
At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1) domain... 30 1.8
At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1) domain... 30 1.8
At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1) domain... 30 1.8
At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replicati... 29 3.1
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 29 4.1
At1g06850.1 68414.m00730 bZIP transcription factor, putative con... 29 5.4
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 7.2
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 28 7.2
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 28 9.5
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 142 bits (344), Expect = 3e-34
Identities = 68/75 (90%), Positives = 71/75 (94%)
Frame = +3
Query: 30 YPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLE 209
+PGDVFYLHSRLLERAAK SD+ G GSLTALPVIETQAGDVSAYIPTNVISITDGQI LE
Sbjct: 567 FPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLE 626
Query: 210 TELFYKGIRPAINVG 254
TELFY+GIRPAINVG
Sbjct: 627 TELFYRGIRPAINVG 641
Score = 130 bits (314), Expect = 1e-30
Identities = 65/83 (78%), Positives = 70/83 (84%)
Frame = +2
Query: 254 LSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDAATQQLLNRGMRLTELL 433
LSVSRVGSAAQ KAMKQV GS KLELAQYREVAAFAQFGSDLDAATQ LLNRG RLTE+
Sbjct: 642 LSVSRVGSAAQLKAMKQVCGSSKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVP 701
Query: 434 KQGQYVPMAIEEQVAIIYCGVRG 502
KQ QY P+ IE+Q+ +IY V G
Sbjct: 702 KQPQYAPLPIEKQILVIYAAVNG 724
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 27 GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
GYPG ++ + + ERA ++ + G S+T +P++ D++ P IT+GQI++
Sbjct: 299 GYPGYMYTDLATIYERAGRIEGRKG--SITQIPILTMPNDDITHPTPDLTGYITEGQIYI 356
Query: 207 ETELFYKGIRPAINV 251
+ +L + I P INV
Sbjct: 357 DRQLHNRQIYPPINV 371
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 27 GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
GYPG ++ + + ERA ++ + G S+T +P++ D++ P IT+GQI++
Sbjct: 299 GYPGYMYTDLATIYERAGRIEGRKG--SITQIPILTMPNDDITHPTPDLTGYITEGQIYI 356
Query: 207 ETELFYKGIRPAINV 251
+ +L + I P INV
Sbjct: 357 DRQLHNRQIYPPINV 371
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 46.4 bits (105), Expect = 3e-05
Identities = 24/75 (32%), Positives = 43/75 (57%)
Frame = +3
Query: 27 GYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFL 206
GYPG ++ + + ERA ++ + G S+T +P++ D++ P IT+GQI++
Sbjct: 298 GYPGYMYTDLATIYERAGRIEGRKG--SITQIPILTMPNDDITHPTPDLTGYITEGQIYI 355
Query: 207 ETELFYKGIRPAINV 251
+ +L + I P INV
Sbjct: 356 DRQLHNRQIYPPINV 370
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +3
Query: 42 VFYLH-SRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETEL 218
V+Y + + ERA ++ + G S+T +P++ D++ P IT+GQI+++ +L
Sbjct: 301 VYYTDLATIYERAGRIEGRKG--SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQL 358
Query: 219 FYKGIRPAINV 251
+ I P INV
Sbjct: 359 HNRQIYPPINV 369
>At1g13830.1 68414.m01623 beta-1,3-glucanase-related similar to
beta-1,3-glucanase-like protein (GI:14279169) [Olea
europaea] similar to Glucan endo-1,3-beta-glucosidase
precursor (EC 3.2.1.39) ((1-3)-beta- glucan
endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3-
endoglucanase) (Swiss-Prot:P52409) [Triticum aestivum]
Length = 197
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 563 SKLATRVCSPRSPKTVRSPPSLTPP 637
S LA P SP + RSPPS TPP
Sbjct: 98 SNLANGCIYPSSPSSTRSPPSTTPP 122
>At3g26510.4 68416.m03309 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 521 PPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTPP 637
PP +LPS ++S ++ SPRSP + P +PP
Sbjct: 126 PPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At3g26510.3 68416.m03306 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 218
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 521 PPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTPP 637
PP +LPS ++S ++ SPRSP + P +PP
Sbjct: 148 PPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 186
>At3g26510.2 68416.m03307 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 521 PPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTPP 637
PP +LPS ++S ++ SPRSP + P +PP
Sbjct: 126 PPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At3g26510.1 68416.m03308 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 196
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 521 PPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTPP 637
PP +LPS ++S ++ SPRSP + P +PP
Sbjct: 126 PPLALPSSTTTSSSSTTSSTSSSPRSPSLSKPPLPPSPP 164
>At4g02060.1 68417.m00276 prolifera protein (PRL) / DNA replication
licensing factor Mcm7 (MCM7) identical to DNA
replication licensing factor Mcm7 SP|P43299 PROLIFERA
protein {Arabidopsis thaliana}; contains Pfam profile
PF00493: MCM2/3/5 family
Length = 716
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 446 YVPMAIEEQVAIIYCGVRGHLTSWTPPKSLPSRRNLLNTSKLATRVCSPRSPKTV 610
YVP +EE +A Y +R P S + R LL+ +++ + R ++V
Sbjct: 567 YVPAELEEYIATAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSESV 621
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = +3
Query: 393 SNCSTEECVLLSSSSKDNMCPWLLRNRSPSFTAV---SAVTSQAGPLQNHCLREGIYSTH 563
S+CST S S N PW + SP F+++ S+ S GP G +S
Sbjct: 123 SSCSTPSSFSPDSFSHSNTGPWSIPQPSPVFSSIAPASSALSSFGPDSFSHSNTGTWSIP 182
Query: 564 QN*PPGSAL 590
Q P S++
Sbjct: 183 QPSPVFSSI 191
>At1g06850.1 68414.m00730 bZIP transcription factor, putative
contains Pfam profile: PF00170 bZIP transcription factor
Length = 337
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 480 SFTAVSAVTSQAGPLQNHCLREGIYSTHQN*PPGSALHDRQRRSD 614
SF V ++TS P QN L S N PP + R R S+
Sbjct: 72 SFIDVDSLTSNPNPFQNPSLSSNSVSGAANPPPPPSSRPRHRHSN 116
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 506 LTSWTPPKSLPSRRNLLNTSKLATRVCSPRSPKTVRSPPSLTP 634
+ S PP S P + TS T SP P + SPP TP
Sbjct: 60 VVSSPPPSSSPPPSPPVITSPPPTVASSPPPPVVIASPPPSTP 102
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 417 VLLSSSSKDNMCPWLLRNRSPSFTAVSAVTSQAGPLQNHCLR-EGIYSTHQN*PPGSALH 593
+LLS S+ N+C W S +S +T GP++ CL E + HQ A
Sbjct: 379 LLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVK--CLAVEEERACHQGAKASVAEG 436
Query: 594 DRQ 602
DR+
Sbjct: 437 DRK 439
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 544 KEFTQHIKTSHQGLLSTIAKDGQIT 618
++ QH T H+GLLST KDG I+
Sbjct: 940 QQLFQHCHTHHEGLLST-KKDGMIS 963
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,753,706
Number of Sequences: 28952
Number of extensions: 452192
Number of successful extensions: 1340
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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