Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30349
(908 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000F214F8 Cluster: PREDICTED: similar to Collagen, ... 40 0.12
UniRef50_UPI0000E811ED Cluster: PREDICTED: similar to collagen X... 38 0.27
UniRef50_P29400 Cluster: Collagen alpha-5(IV) chain precursor; n... 37 0.82
UniRef50_Q6CED4 Cluster: Yarrowia lipolytica chromosome B of str... 36 1.4
UniRef50_UPI0000DBF905 Cluster: UPI0000DBF905 related cluster; n... 36 1.9
UniRef50_A0R7R0 Cluster: TraB pilus assembly family protein prec... 35 2.5
UniRef50_Q8NFW1 Cluster: Collagen alpha-1(XXII) chain; n=23; Eut... 35 3.3
UniRef50_P90679 Cluster: Fibrillar collagen; n=2; Annelida/Echiu... 34 4.4
UniRef50_A7KE05 Cluster: Collagen Type XI Alpha2; n=2; Salmo sal... 34 5.8
UniRef50_A4FYW6 Cluster: Putative uncharacterized protein; n=4; ... 34 5.8
UniRef50_Q9BXS0 Cluster: Collagen alpha-1(XXV) chain (CLAC-P) (A... 34 5.8
UniRef50_Q01955 Cluster: Collagen alpha-3(IV) chain precursor (G... 34 5.8
UniRef50_Q4RIV6 Cluster: Chromosome undetermined SCAF15041, whol... 33 7.6
UniRef50_Q1LV35 Cluster: Novel protein similar to vertebrate col... 33 7.6
UniRef50_A7TTZ7 Cluster: Collagen-like surface protein A; n=1; S... 33 7.6
UniRef50_P25050 Cluster: Saimiri transformation-associated prote... 33 7.6
>UniRef50_UPI0000F214F8 Cluster: PREDICTED: similar to Collagen,
type XXIV, alpha 1; n=2; Danio rerio|Rep: PREDICTED:
similar to Collagen, type XXIV, alpha 1 - Danio rerio
Length = 469
Score = 39.5 bits (88), Expect = 0.12
Identities = 23/52 (44%), Positives = 27/52 (51%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGKFF*IIIMGTFPIGEITQ 748
PG PGPP K+G R P P GS PG P GL+ K + G P G+ Q
Sbjct: 419 PGLPGPPGKRGARGPPGPHGS-PGPPGLPGLKGAKGDPGLSPGQAPAGDPVQ 469
>UniRef50_UPI0000E811ED Cluster: PREDICTED: similar to collagen
XXVII proalpha 1 chain precursor; preproprotein; n=1;
Gallus gallus|Rep: PREDICTED: similar to collagen XXVII
proalpha 1 chain precursor; preproprotein - Gallus
gallus
Length = 687
Score = 38.3 bits (85), Expect = 0.27
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
+PG PGPP K+G R P P G+ PG+P GL+ K
Sbjct: 526 LPGLPGPPGKRGSRGPPGPHGN-PGSPGPPGLKGQK 560
>UniRef50_P29400 Cluster: Collagen alpha-5(IV) chain precursor;
n=61; Eumetazoa|Rep: Collagen alpha-5(IV) chain
precursor - Homo sapiens (Human)
Length = 1685
Score = 36.7 bits (81), Expect = 0.82
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
+PG GPP G+R P P G + G E+G EPGK
Sbjct: 262 LPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG-EPGK 296
>UniRef50_Q6CED4 Cluster: Yarrowia lipolytica chromosome B of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome B of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 921
Score = 35.9 bits (79), Expect = 1.4
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
P +PGPP G LP+S G PGT S G
Sbjct: 15 PSSPGPPSSPGANLPSSFAGRTPGTTSAHG 44
>UniRef50_UPI0000DBF905 Cluster: UPI0000DBF905 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF905 UniRef100 entry -
Rattus norvegicus
Length = 1513
Score = 35.5 bits (78), Expect = 1.9
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLE 808
PG PGPP K GL P G +PG P + GLE
Sbjct: 1400 PGPPGPPGKDGLPGRTGPMG-EPGRPGQGGLE 1430
Score = 34.7 bits (76), Expect = 3.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
+PG GPP K+G P P+G PG P EEG
Sbjct: 1117 LPGPQGPPGKEGPPGPQGPSGI-PGIPGEEG 1146
>UniRef50_A0R7R0 Cluster: TraB pilus assembly family protein
precursor; n=1; Pelobacter propionicus DSM 2379|Rep:
TraB pilus assembly family protein precursor -
Pelobacter propionicus (strain DSM 2379)
Length = 468
Score = 35.1 bits (77), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 803 PGSNPSSDGVPGLEPVGEFGNLRPCFKGGPGVPG 904
PGS+ + +PG+ G + P GGPGVPG
Sbjct: 182 PGSSKGRNSIPGMPTTGGIPGVPPGTPGGPGVPG 215
>UniRef50_Q8NFW1 Cluster: Collagen alpha-1(XXII) chain; n=23;
Euteleostomi|Rep: Collagen alpha-1(XXII) chain - Homo
sapiens (Human)
Length = 1626
Score = 34.7 bits (76), Expect = 3.3
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLE 808
PG PGPP K GL P G +PG P + GLE
Sbjct: 1499 PGPPGPPGKDGLPGRAGPMG-EPGRPGQGGLE 1529
Score = 34.3 bits (75), Expect = 4.4
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSK--PGTPSEEGLEPGK 799
PG GPP K G P P G+K PG E+GL PGK
Sbjct: 746 PGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGL-PGK 781
>UniRef50_P90679 Cluster: Fibrillar collagen; n=2;
Annelida/Echiura/Pogonophora group|Rep: Fibrillar
collagen - Arenicola marina (Lugworm) (Rock worm)
Length = 684
Score = 34.3 bits (75), Expect = 4.4
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGL--EPG 802
PG PG P +QGL P P G+ PG+P +G EPG
Sbjct: 103 PGGPGQPGQQGLVGPTGPAGA-PGSPGSKGNRGEPG 137
>UniRef50_A7KE05 Cluster: Collagen Type XI Alpha2; n=2; Salmo
salar|Rep: Collagen Type XI Alpha2 - Salmo salar
(Atlantic salmon)
Length = 1590
Score = 33.9 bits (74), Expect = 5.8
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
PG PGPP +QGL P+ G+K G P G PGK
Sbjct: 810 PGPPGPPGEQGLSGPSGKEGTK-GDPGPPG-GPGK 842
Score = 33.5 bits (73), Expect = 7.6
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTG--SKPGTPSEEGLEPGK 799
I G PGP + GL PN P+G G P E GL PGK
Sbjct: 331 IEGPPGPEGQAGLPGPNGPSGPPGSVGDPGERGL-PGK 367
>UniRef50_A4FYW6 Cluster: Putative uncharacterized protein; n=4;
Methanococcus maripaludis|Rep: Putative uncharacterized
protein - Methanococcus maripaludis
Length = 222
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 476 ILKRTINKFVKI*LLNTFLDIYLDNIHKYKLFKSCVLKFYRKNA 607
+LK +K ++ L T L++Y+ +++ ++ K + KFYRKNA
Sbjct: 82 VLKVNYSKKGRVDLSKTVLNLYVSDVNDFEKKKRIIEKFYRKNA 125
>UniRef50_Q9BXS0 Cluster: Collagen alpha-1(XXV) chain (CLAC-P)
(Alzheimer disease amyloid- associated protein) (AMY)
[Contains: Collagen-like Alzheimer amyloid plaque
component (CLAC)]; n=42; Euteleostomi|Rep: Collagen
alpha-1(XXV) chain (CLAC-P) (Alzheimer disease amyloid-
associated protein) (AMY) [Contains: Collagen-like
Alzheimer amyloid plaque component (CLAC)] - Homo
sapiens (Human)
Length = 654
Score = 33.9 bits (74), Expect = 5.8
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSK--PGTPSEEGLEPGK 799
+ G PGPP QGL+ P GS PG E+GL+ K
Sbjct: 447 VTGPPGPPGPQGLQGPKGEQGSPGIPGMDGEQGLKGSK 484
>UniRef50_Q01955 Cluster: Collagen alpha-3(IV) chain precursor
(Goodpasture antigen) [Contains: Tumstatin]; n=61;
Eumetazoa|Rep: Collagen alpha-3(IV) chain precursor
(Goodpasture antigen) [Contains: Tumstatin] - Homo
sapiens (Human)
Length = 1670
Score = 33.9 bits (74), Expect = 5.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3
Query: 900 GTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
GTPGPP +G R P P+G PG P G
Sbjct: 357 GTPGPPGPRGARGPQGPSG-PPGVPGSPG 384
>UniRef50_Q4RIV6 Cluster: Chromosome undetermined SCAF15041, whole
genome shotgun sequence; n=2; Eukaryota|Rep: Chromosome
undetermined SCAF15041, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1388
Score = 33.5 bits (73), Expect = 7.6
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
PG PGPP +QGL P+ G+K G P G PGK
Sbjct: 464 PGPPGPPGEQGLPGPSGKEGTK-GDPGPPG-GPGK 496
>UniRef50_Q1LV35 Cluster: Novel protein similar to vertebrate
collomin; n=2; Danio rerio|Rep: Novel protein similar to
vertebrate collomin - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 542
Score = 33.5 bits (73), Expect = 7.6
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PG P G R P+G K G P E+G EPG
Sbjct: 193 IPGLPGEPGAHGKRGKRGPSGEK-GEPGEKG-EPG 225
>UniRef50_A7TTZ7 Cluster: Collagen-like surface protein A; n=1;
Streptococcus pyogenes|Rep: Collagen-like surface
protein A - Streptococcus pyogenes
Length = 372
Score = 33.5 bits (73), Expect = 7.6
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSK--PGTPSEEGL 811
+PG PG P ++GLR P G K GTP ++GL
Sbjct: 106 LPGLPGLPGERGLRGPKGDRGEKGEAGTPGKDGL 139
>UniRef50_P25050 Cluster: Saimiri transformation-associated protein;
n=8; Saimiriine herpesvirus 2|Rep: Saimiri
transformation-associated protein - Saimiriine
herpesvirus 2 (strain 484-77) (SaHV-2)
(Herpesvirussaimiri)
Length = 105
Score = 33.5 bits (73), Expect = 7.6
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGKFF*IIIMG 775
PG GPP QG P P G PG P GL PG F +++G
Sbjct: 44 PGPQGPPGPQGPPGPQGPPG-PPGPPGPSGL-PGLFVTNLLLG 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,306,210
Number of Sequences: 1657284
Number of extensions: 19974417
Number of successful extensions: 45891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 41532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45646
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 82801539422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -