Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30349
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   6.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    26   8.5  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
           PG P PP+     +PN      P  P    L PG
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPG 534


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -2

Query: 856 FPYGFQTGDPIGGRI-GTRKIFL---NNYYGDLSYR*NYPTP*GLMAVPF*DSAQCQVWW 689
           F YGF   +P G RI    K+ +   +N   DL+ R +  TP     + F   +  ++WW
Sbjct: 242 FSYGFLP-EPEGDRITNVMKLLIPEDSNDSLDLAKRRSCKTP---PMIEFVSDSSGELWW 297

Query: 688 KLPFL 674
             PFL
Sbjct: 298 HAPFL 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,847,600
Number of Sequences: 5004
Number of extensions: 83705
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)