Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30349
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0131 - 20046033-20046505,20047140-20047233,20047343-200474...    29   6.7  
06_03_0905 + 25843547-25844314                                         28   8.9  
03_05_0663 + 26546810-26547304                                         28   8.9  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    28   8.9  

>02_04_0131 -
           20046033-20046505,20047140-20047233,20047343-20047434,
           20047560-20047611,20047721-20047878,20048190-20048280,
           20048397-20049455
          Length = 672

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 759 EITQPPKG*WPSPFRIPPNVKCGGNYLFSA 670
           +ITQ  +G W S   +PP++   G YL SA
Sbjct: 509 KITQKFQGQWRSKVLVPPSLTPDGRYLISA 538


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGKFF*IIIMGTFPIGEITQPPKG*WPS 724
           PG P  P     R P  PT   P T     + P K    + +   P G +T+PP   +P+
Sbjct: 50  PGHPKGPKNPTPRPPKGPTYPSPVTRPPPLVAPPK----VPVTHPPKGPVTRPPPVTYPT 105

Query: 723 PFRIPPNVKCG 691
           P    P V  G
Sbjct: 106 PPVTTPPVVVG 116


>03_05_0663 + 26546810-26547304
          Length = 164

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 800 FPGSNPSSDGVPGLEPVGEFGNLRPCFKGGPG---VPGI 907
           +PG+NP   G  G+  +  FG++ P   GG G   VPG+
Sbjct: 51  YPGTNPGGGGGGGIPTIPGFGSI-PGMGGGMGGFNVPGM 88


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTP 826
           +P  PG PL  G+R P  P    PG P
Sbjct: 98  VPQVPGAPLMPGVRPPILPAPGIPGYP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,606,704
Number of Sequences: 37544
Number of extensions: 513585
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)