Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30349
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    32   0.74 
SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)                31   0.97 
SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)                   30   3.0  
SB_26388| Best HMM Match : Defensin_1 (HMM E-Value=5.5)                30   3.0  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              30   3.0  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_31263| Best HMM Match : TP2 (HMM E-Value=5.5)                       30   3.0  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   3.0  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    29   3.9  
SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)         29   5.2  
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)      29   5.2  
SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)              28   9.1  
SB_10452| Best HMM Match : TP2 (HMM E-Value=9.5)                       28   9.1  

>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSK-----PGTPSEEGLEPG 802
           PG PGPP   G   P+ P+GS       GTP  +G EPG
Sbjct: 662 PGRPGPPGPPGPPGPSGPSGSNGRNGVKGTPGRDG-EPG 699


>SB_36007| Best HMM Match : Collagen (HMM E-Value=9e-25)
          Length = 311

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
           PG+PGP    G R PN P G   G P ++G
Sbjct: 120 PGSPGPQGFNGARGPNGPKGDS-GRPGQDG 148


>SB_38313| Best HMM Match : XYPPX (HMM E-Value=0.069)
          Length = 135

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 803 PGSNPSSDGVPGLEPVGEFGNLRPCFKGGPGVPGI 907
           PG  P S G  G  P G +   +P + GGP  PGI
Sbjct: 41  PGGYPPSGGY-GYPPAGGYPPPQPGYAGGPPPPGI 74


>SB_26388| Best HMM Match : Defensin_1 (HMM E-Value=5.5)
          Length = 178

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 885 PLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
           P KQG    N     +PG P+  GL PG
Sbjct: 136 PAKQGSPASNQAASLRPGIPASRGLSPG 163


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/34 (50%), Positives = 17/34 (50%)
 Frame = -3

Query: 903  PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
            PG PGP    GL  P  P G K G P   GL PG
Sbjct: 1670 PGPPGPDGPMGLPGPQGPDGPK-GPPGPPGL-PG 1701



 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 906  IPGTPGPPLKQGLR-LPNSPTG--SKPGTPSEEGLEPGK 799
            +PG PGPP   G +  P +P G   + G P   G + GK
Sbjct: 1842 VPGPPGPPGAYGWKGYPGNPAGPPGRDGIPGPPGRQGGK 1880


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -3

Query: 891 GPPLKQGLRLPNSPTGSKPGTPSEEGL-----EPGKFF*IIIMGTFPIGEITQPPKG*WP 727
           G P ++   LP  P+G KP TP++E       + G  F ++     P G    PPK    
Sbjct: 596 GSPPERKRTLPRVPSGEKPFTPTKESTRIDTKQLGTTFVLVNRRDLPTG--PPPPKPPRT 653

Query: 726 SPFRIPPNV 700
            P  +PP V
Sbjct: 654 LPQGVPPPV 662


>SB_31263| Best HMM Match : TP2 (HMM E-Value=5.5)
          Length = 177

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 906 IPGTPGPP--LKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
           IP  P PP   K+ L LP+ PTG+    PS   +  GK
Sbjct: 92  IPSLPSPPSQAKKPL-LPSPPTGTPSSVPSRRDIRKGK 128


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 885 PLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
           P KQG    N     +PG P+  GL PG
Sbjct: 63  PAKQGSPASNQAASLRPGIPASRGLSPG 90


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLRLPNSPTGS--KPGTPSEEGLE--PGK 799
           +PG PGPP  QG   P +P G+   PG P   G+   PG+
Sbjct: 68  LPGPPGPPGFQG--PPGNPAGAIGPPGLPGPNGVNGPPGE 105



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/36 (44%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSK--PGTPSEEGLEPG 802
           PG PGP    G   P  P G K  PG P   G  PG
Sbjct: 42  PGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPG-PPG 76



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 900 GTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
           G PGPP   G ++P  P G  PG P   G  PG
Sbjct: 110 GPPGPPGPPGPQMPPGPPG-LPGPPGPAG-PPG 140



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
           PG PGPP  +G   PN P G  PG     G
Sbjct: 637 PGPPGPPGPKGPPGPNGPLG-PPGESGPAG 665


>SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 906 IPGTPGPPLK-QGLRLPNSPTGSKPGTPSEEGLEPGK 799
           +P  P PP + +   LP+ PTG+    PS   +  GK
Sbjct: 92  LPSLPSPPSQAEQPLLPSPPTGTPASVPSRRDIRKGK 128


>SB_53726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 348 KVQAISLGTFKSSFTFRYVACKGILQFWHNSFSQSQLVLCQTV 476
           K+  +++G F     F YV CK  +Q W    + +++++ Q V
Sbjct: 786 KLVVVAIG-FTGGLVFMYVQCKVYVQLWKRLRAYNRIIMVQDV 827


>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
          Length = 823

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 585 KTQLLNNLYLCILSRYMSKNVFNNQILTNLFIVLFKIL 472
           K + L  ++ C+L  Y  +NV N  I+T LF+++F ++
Sbjct: 72  KAKKLKAVFQCML--YSLRNVLNILIITVLFLIIFSVI 107


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 861 PNSPTGSKPGTPSEEGLEP 805
           P++P   KP TPS EG+ P
Sbjct: 291 PSAPASPKPSTPSSEGMPP 309


>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
          Length = 851

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 854 PLRVPNRGPHRRKDWNPEN 798
           PLR PN  P  ++DW PEN
Sbjct: 832 PLRKPNLLPPIKRDWRPEN 850


>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
           PGT GPP   G++  +   G +PG P  +G+ PG
Sbjct: 135 PGTDGPPGDAGMQGSDGANG-QPGLPGRDGV-PG 166


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGL 811
           +PG  GPP   G R P  PTG  PGT   +G+
Sbjct: 509 LPGI-GPPGPDGDRGPQGPTGF-PGTKGNQGI 538


>SB_29801| Best HMM Match : Collagen (HMM E-Value=3.2e-12)
          Length = 182

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSK--PGTPSEEGL--EPGK 799
           PG PG   K G+R P  P G K   G     GL  +PGK
Sbjct: 52  PGKPGADGKPGIRGPPGPKGDKGEKGDAGPRGLKGDPGK 90


>SB_10452| Best HMM Match : TP2 (HMM E-Value=9.5)
          Length = 177

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 906 IPGTPGPPLK-QGLRLPNSPTGSKPGTPSEEGLEPGK 799
           +P  P PP + +   LP+ PTG+    PS   +  GK
Sbjct: 92  LPPLPSPPSQAEQPLLPSPPTGTPASVPSRRDIRKGK 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,810,785
Number of Sequences: 59808
Number of extensions: 617622
Number of successful extensions: 1238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)