Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30349
         (908 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    30   0.11 
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    29   0.26 
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   7.3  
AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    23   9.7  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 29.9 bits (64), Expect = 0.11
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGL--EPGK 799
           +PG PGPP   GL     P G + G   E+G   EPG+
Sbjct: 395 LPGIPGPPCVDGLPGAAGPVGPR-GYDGEKGFKGEPGR 431



 Score = 27.9 bits (59), Expect = 0.45
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +2

Query: 824 DGVPGLE----PVGEFGNLRPCFKGGPGVPG 904
           +G+PG++    P+GE G+  P  KG  G+PG
Sbjct: 523 NGLPGMKGDMGPLGEKGDACPVVKGEKGLPG 553



 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
 Frame = -3

Query: 900 GTPGPPLKQGLRLPNSPTGSK-----PGTPSEEGLE 808
           GTPGPP   G   P    G K     PG P   G++
Sbjct: 146 GTPGPPGYPGDVGPKGEPGPKGPAGHPGAPGRPGVD 181



 Score = 23.4 bits (48), Expect = 9.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLR 865
           IPG PG P + GLR
Sbjct: 741 IPGAPGAPGEMGLR 754


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 815 PSSDGVPGLE-PVGEFGNL----RPCFKGGPGVPGI 907
           P +DG+ GL  P GE G      RP  KG PG PG+
Sbjct: 231 PGNDGLEGLPGPQGEVGPRGFPGRPGEKGVPGTPGV 266



 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
           PG PGP   +G   P  P G   G   E+G
Sbjct: 410 PGAPGPKGPRGYEGPQGPKG-MDGFDGEKG 438



 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 900 GTPGPPLKQGLRLPNSPTGSKPGTPSE 820
           G PGP  + GL  P  P+G +PG  +E
Sbjct: 628 GEPGPKGEPGLLGPPGPSG-EPGRDAE 653


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 346  LKFKPLA*GLSKAPLHFVT*LVKGYCNFGTILLVSLNLCCAKQYFE 483
            L+F+P   G S+  LHF+  L K   N    + + +++  A + ++
Sbjct: 988  LEFRPKHQGPSEVQLHFLEMLTKAVHNLFQYMDIPVDVAVAHRLYD 1033


>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 636 DVIYHQ*QLRAFLR*NFKTQLLNNLYLCILSRYMSKNVFNN 514
           D I+HQ  L   ++ NF + L+N +   I +R    ++ N+
Sbjct: 79  DSIWHQGLLSKLIKLNFPSYLINIVNSFISNRQNKVHILNS 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 977,716
Number of Sequences: 2352
Number of extensions: 21200
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 98401338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)