Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30349
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 34 0.12
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 34 0.16
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 33 0.37
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 33 0.37
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 33 0.37
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 32 0.49
U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protei... 31 0.86
M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein. 31 0.86
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 31 1.1
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 1.1
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 30 2.0
U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical pr... 30 2.0
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 30 2.6
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 30 2.6
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 2.6
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 30 2.6
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 30 2.6
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 30 2.6
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 30 2.6
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 30 2.6
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 30 2.6
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 2.6
AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen pro... 30 2.6
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 29 3.5
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 29 4.6
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 29 4.6
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 29 4.6
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 29 4.6
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 29 4.6
AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical ... 29 4.6
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 29 4.6
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 29 4.6
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 4.6
Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 6.1
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 6.1
U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical pr... 29 6.1
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 29 6.1
U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protei... 29 6.1
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 6.1
AF016665-8|AAC71178.1| 324|Caenorhabditis elegans Serpentine re... 29 6.1
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 6.1
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 28 8.0
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 28 8.0
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = -3
Query: 900 GTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
G PGPP KQG + PN G+ PGTP L PG
Sbjct: 189 GPPGPPGKQGPKGPNGEPGA-PGTPGGNAL-PG 219
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSK-----PGTPSEEGLEPG 802
+PG PGPP + G + P P GS PG P +G EPG
Sbjct: 204 VPGPPGPPGQAGQQGPPGPPGSNGIDGAPGAPGAKG-EPG 242
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSP-TGSKPGTPSEEGLEP 805
PGTPG P K G P P T + GTP E+G+ P
Sbjct: 241 PGTPGEPGKDG--EPGKPGTPGQDGTPGEKGICP 272
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
IPG PGPP + G P P GS PG P +G PG+
Sbjct: 214 IPGEPGPPGEAG---PQGPPGS-PGQPGADG-SPGQ 244
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
IPG PGPP + G P P GS PG P +G PG+
Sbjct: 213 IPGEPGPPGEAG---PQGPPGS-PGQPGADG-SPGQ 243
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
IPG PGPP + G P P GS PG P +G PG+
Sbjct: 214 IPGEPGPPGEAG---PQGPPGS-PGQPGADG-SPGQ 244
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
PG PGPP K G P+ P G+ PGT G
Sbjct: 264 PGPPGPPGKDGEAGPDGPAGA-PGTDGAPG 292
>U41553-3|AAA83293.1| 289|Caenorhabditis elegans Collagen protein
19 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
PG PG P QG R P G+ PG P +G E GK
Sbjct: 212 PGQPGRPGPQGPRGETGPAGN-PGAPGNDG-EAGK 244
>M25481-1|AAA27987.1| 283|Caenorhabditis elegans collagen protein.
Length = 283
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
PG PG P QG R P G+ PG P +G E GK
Sbjct: 206 PGQPGRPGPQGPRGETGPAGN-PGAPGNDG-EAGK 238
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 906 IPGTPGP---PLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
+PG PGP P QG P+ P G +PG P + G +PG
Sbjct: 227 VPGAPGPAGQPGSQGEPGPSGPDG-RPGQPGQAG-QPG 262
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGL--EPGK 799
+PG PGPP G P+ P G+ PG P E+G EPGK
Sbjct: 187 VPGLPGPP---G---PSGPQGA-PGVPGEKGPTGEPGK 217
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGPP G + P P G K G P + G PG
Sbjct: 224 PGPPGPPGPPGPQGPPGPPG-KDGQPGKAG-PPG 255
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
P TPG P QG P P G +PG P +G +PG
Sbjct: 212 PITPGAPGPQGAPGPQGPPG-QPGQPGHDG-QPG 243
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
P TPG P QG P P G +PG P +G +PG
Sbjct: 179 PITPGAPGPQGTPGPQGPPG-QPGQPGHDG-QPG 210
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
P TPG P QG P P G +PG P +G +PG
Sbjct: 212 PITPGAPGPQGTPGPQGPPG-QPGQPGHDG-QPG 243
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PG P + G P P+G+ PG P +G PG
Sbjct: 237 PGAPGGPGQAGAPGPKGPSGA-PGQPGADG-NPG 268
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PG P + G P P+G+ PG P +G PG
Sbjct: 237 PGAPGGPGQAGAPGPKGPSGA-PGQPGADG-NPG 268
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PG P + G P P+G+ PG P +G PG
Sbjct: 237 PGAPGGPGQAGAPGPKGPSGA-PGQPGADG-NPG 268
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/34 (50%), Positives = 17/34 (50%)
Frame = +2
Query: 803 PGSNPSSDGVPGLEPVGEFGNLRPCFKGGPGVPG 904
P NP SDG PG G GN GGPG PG
Sbjct: 172 PNGNPGSDGQPGAP--GNNGN-----AGGPGAPG 198
>U56965-2|AAB52667.3| 581|Caenorhabditis elegans Hypothetical
protein C15H9.5 protein.
Length = 581
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 382 APLHFVT*LVKGYCNFGTILLVSLNLCCAKQYFEENNK 495
A L+++T L+KG FGT++L+ KQ+ + ++
Sbjct: 326 AVLYYITHLLKGLLLFGTLILIGTGYTFIKQFLTDRDR 363
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEP 805
PG PGPP ++ P PT PG P P
Sbjct: 247 PGPPGPPTRRPPGPPGPPTRRPPGPPGPPTRRP 279
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTG--SKPGTPSEEGLE--PGK 799
PG GPP QG P+ G +PG P +G + PGK
Sbjct: 138 PGPRGPPGPQGEEGPSGDVGEDGEPGVPGNDGADGTPGK 176
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PGP + G R +P S PG P ++G +PG
Sbjct: 439 IPGLPGPKGEPGYR--GTPGQSIPGLPGKDG-KPG 470
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PGP + G R +P S PG P ++G +PG
Sbjct: 438 IPGLPGPKGEPGYR--GTPGQSIPGLPGKDG-KPG 469
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEP 805
PG GPP G P P G GTP E+G+ P
Sbjct: 248 PGPDGPPGADGQSGPPGPPG-PAGTPGEKGICP 279
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGPP G P P G K G P +G PG
Sbjct: 224 PGPPGPPGAPGNDGPPGPPGPK-GAPGPDG-PPG 255
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PGP + G R +P S PG P ++G +PG
Sbjct: 438 IPGLPGPKGEPGYR--GTPGQSIPGLPGKDG-KPG 469
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PGP + G R +P S PG P ++G +PG
Sbjct: 439 IPGLPGPKGEPGYR--GTPGQSIPGLPGKDG-KPG 470
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 903 PGTPG---PPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PG PP + G + P P GS PG P E G PG
Sbjct: 176 PGAPGGDAPPGEAGPKGPPGPPGS-PGAPGEPG-RPG 210
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
I G GPP QG++ P P+G P + G +PG
Sbjct: 210 IKGPLGPPGPQGMKGPPGPSGKGSNQPGQPG-QPG 243
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
PG GPP G + PN P GS PG ++G
Sbjct: 199 PGQTGPPGFPGQKGPNGPRGS-PGLQGQDG 227
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
IPG PGP + G R +P S PG P ++G +PG
Sbjct: 475 IPGLPGPKGEPGYR--GTPGQSIPGLPGKDG-KPG 506
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEP 805
PG GPP G P P G GTP E+G+ P
Sbjct: 248 PGPDGPPGADGQSGPPGPPG-PAGTPGEKGICP 279
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGPP G P P G K G P +G PG
Sbjct: 224 PGPPGPPGAPGNDGPPGPPGPK-GAPGPDG-PPG 255
>AC006790-10|AAF60736.1| 371|Caenorhabditis elegans Collagen
protein 71 protein.
Length = 371
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGS-----KPGTPSEEGLEP 805
+PG PGPP G PN G+ PG P E EP
Sbjct: 173 LPGPPGPPGPPGRPGPNGKAGANGLNGNPGRPPEAPCEP 211
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEG-LEPG 802
+PGTPGP G P P G+ PG P + G +PG
Sbjct: 239 VPGTPGPAGPPG---PPGPAGA-PGQPGQSGSAQPG 270
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEP 805
PG GPP G P P G GTP E+G+ P
Sbjct: 253 PGPDGPPGVDGQSGPPGPPG-PAGTPGEKGICP 284
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/34 (47%), Positives = 17/34 (50%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGPP G P P G K G P +G PG
Sbjct: 229 PGPPGPPGAPGNDGPPGPPGPK-GAPGPDG-PPG 260
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -3
Query: 900 GTPGPPLKQGLRLPNSPTG--SKPGTPSEEG 814
G PGP + G+R PN P G PG P G
Sbjct: 152 GPPGPDGEPGVRGPNGPPGPNGHPGQPGRPG 182
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 900 GTPGPPLKQGLRLPNSPTG--SKPGTPSEEGLEPGK 799
G PGPP G PN G +PG P ++G E GK
Sbjct: 180 GPPGPPGPDGDSGPNGEAGPNGEPGAPGKDG-EKGK 214
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEG-LEPGK 799
+PGTPGP G P P G+ PG P + G +PG+
Sbjct: 236 VPGTPGPAGPPG---PAGPAGA-PGQPGQAGHAQPGQ 268
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGL-EPG 802
+PGTPGP G P P G+ PG P + G +PG
Sbjct: 235 VPGTPGPAGPPG---PPGPAGA-PGQPGQSGSGQPG 266
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
I G PGPP G R P P GS G PS+ PG
Sbjct: 213 IKGPPGPP---GPRGPKGPPGSN-GLPSQNSGPPG 243
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSK--PGTP 826
PG PG P G+ PN PTG + GTP
Sbjct: 273 PGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
I G PGPP G R P P GS G PS+ PG
Sbjct: 213 IKGPPGPP---GPRGPKGPPGSN-GLPSQNSGPPG 243
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSK--PGTP 826
PG PG P G+ PN PTG + GTP
Sbjct: 273 PGPPGAPGPGGMPGPNGPTGEQGPSGTP 300
>AL034543-4|CAA22518.1| 323|Caenorhabditis elegans Hypothetical
protein Y81G3A.5 protein.
Length = 323
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 900 GTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
G+PGPP G P P G+ PG P +EG+ PG
Sbjct: 175 GSPGPPGGVG---PPGPNGT-PGAPGDEGI-PG 202
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSK--PGTPSEEG 814
IPG PGPP +G P P+G + G P G
Sbjct: 417 IPGPPGPPGPRGHHGPVGPSGERGPQGLPGHSG 449
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PGTPG + G P P+G +PG P +G PG
Sbjct: 231 PGTPGQNGQPGQPGPKGPSG-QPGQPGSDG-NPG 262
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 906 IPGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
IPG PG + G P P+G PG P + G +PG+
Sbjct: 159 IPGNPGRNGEDGAPGPQGPSG-PPGPPGQPG-QPGQ 192
>Z81052-6|CAB02874.1| 336|Caenorhabditis elegans Hypothetical
protein D2023.7 protein.
Length = 336
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSP--TGSKPGTPSEEGLEPGK 799
PG+PG K GLR P TG PGT G PG+
Sbjct: 158 PGSPGERGKPGLRGMRGPRGTGGSPGTDGYPG-RPGE 193
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 903 PGTPGPPLKQG-LRLPNSPTGSKPGTPSEEGLE 808
PG PGPP K G P +P G PGT G++
Sbjct: 211 PGPPGPPGKDGEAGAPGAPGG--PGTDGAPGVD 241
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTG--SKPGTPSEEGLEPG 802
PG GPP + G P PTG + PG +G EPG
Sbjct: 263 PGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQG-EPG 297
>U97593-2|AAY86241.1| 195|Caenorhabditis elegans Hypothetical
protein C46G7.5 protein.
Length = 195
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPGK 799
P P PP Q +RL +SPT + +P +E P K
Sbjct: 123 PRAP-PPSSQTIRLSDSPTKKRSSSPDDENDGPKK 156
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGPP +G P GS PG E G +PG
Sbjct: 216 PGRPGPPGPRGEAGPAGQPGS-PGNDGESG-KPG 247
>U39644-7|AAO44908.1| 307|Caenorhabditis elegans Collagen protein
171 protein.
Length = 307
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 803 PGSNPSSDGVPGLEPVGEFGNLRPCFKGGPGVPGI 907
P NP DG PG G G F GGPG PG+
Sbjct: 179 PNGNPGFDGQPGAP--GNNG-----FAGGPGAPGL 206
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTG--SKPGTPSEEGLEPG 802
PG GPP + G P PTG + PG +G EPG
Sbjct: 263 PGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQG-EPG 297
>AF016665-8|AAC71178.1| 324|Caenorhabditis elegans Serpentine
receptor, class h protein250 protein.
Length = 324
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 555 CILSRYMSKNVFNNQILTNLFIVLFKILFGT 463
C+L Y+ ++NQIL N I+LF FGT
Sbjct: 256 CVLLLYIVIFKYHNQILNNFIIILFS-CFGT 285
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEPG 802
PG PGP G P P G PG P +G +PG
Sbjct: 198 PGVPGPDGDAGSPPPPGPPG-PPGPPGNDG-QPG 229
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTG-SKPGTPSEEG 814
PG GPP + G P+ G S PG P +G
Sbjct: 523 PGIQGPPGRDGTSGPDGQPGVSAPGAPGTDG 553
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 28.3 bits (60), Expect = 8.0
Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Frame = -3
Query: 903 PGTPGPPLK--------QGLRLPNSPTGSKPGTPSEEGLEPGKF 796
PG PGPP GL P P G KPGTP +G PG F
Sbjct: 233 PGPPGPPGSPGENTEGAPGLDGPLGPPG-KPGTPGTDG-APGVF 274
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -3
Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEG 814
PG+PGPP GL P+ G+ PG P ++G
Sbjct: 239 PGSPGPP---GLPGPDGLPGT-PGNPGQDG 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,440,808
Number of Sequences: 27780
Number of extensions: 503538
Number of successful extensions: 1514
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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