Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30349
         (908 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02670.1 68416.m00258 proline-rich family protein contains pr...    29   3.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   7.4  
At5g38970.2 68418.m04712 cytochrome P450, putative similar to Cy...    28   9.8  
At5g38970.1 68418.m04713 cytochrome P450, putative similar to Cy...    28   9.8  
At4g00310.1 68417.m00039 expressed protein                             28   9.8  
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa...    28   9.8  

>At3g02670.1 68416.m00258 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 217

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -3

Query: 906 IPGTPGPPLKQGLRL----PNSP-TGSKPGTPSEEG 814
           IPG PG P   G RL    P+SP  GS PG P   G
Sbjct: 119 IPGLPGIPGSPGFRLPFPFPSSPGGGSIPGIPGSPG 154


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 903 PGTPGPPLKQGLRLPNSPTGSKPGTPSEEGLEP 805
           P  P  P       PN+P+GS P TPS     P
Sbjct: 96  PSNPRSPPSPNQGPPNTPSGSTPRTPSNTKPSP 128


>At5g38970.2 68418.m04712 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 384

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 214 ITFSCSCFADPLINNPYRIVKKS 282
           I +  + + DPLI NP+R +KKS
Sbjct: 295 INYDANLYEDPLIFNPWRWMKKS 317


>At5g38970.1 68418.m04713 cytochrome P450, putative similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 465

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 214 ITFSCSCFADPLINNPYRIVKKS 282
           I +  + + DPLI NP+R +KKS
Sbjct: 376 INYDANLYEDPLIFNPWRWMKKS 398


>At4g00310.1 68417.m00039 expressed protein
          Length = 302

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 24/60 (40%), Positives = 29/60 (48%)
 Frame = +1

Query: 676 EKVISTTLDIGRNPKRGRPLTLRGLGNFTYRKGPHNNYLKKFSGFQSFLRWGPRFGTRRG 855
           EKV+ T   I   PKRGRP   RG G         N Y  +F  +  F   GPR+G +RG
Sbjct: 161 EKVVVT---IPTAPKRGRP---RGSGKKVSAPALKNPY--EFYYYSGF---GPRWGRKRG 209


>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 227

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 873 GLRLPNSPTGSKPGT 829
           GLR+PN PTG +P T
Sbjct: 97  GLRIPNRPTGQRPET 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,767
Number of Sequences: 28952
Number of extensions: 429745
Number of successful extensions: 844
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)