Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30348
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.16
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.28
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.49
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.86
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.86
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 3.5
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 4.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 27 4.6
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 6.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.1
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 26 8.1
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 8.1
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 8.1
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 115 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLS 243
+SS P+ TAS+ T+ + S+S + SP P+++ T S++LS
Sbjct: 94 SSSTPI-TASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +3
Query: 195 ATTKLCPDGLVFDPTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAAM-DSLPIPTPLC 371
+TT T+ TS ++ TAA +++ S +N + + S P TPL
Sbjct: 234 STTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLS 293
Query: 372 ATSSTTAXXXXXXXXXXXXAFTSTS 446
+ +STTA + T+TS
Sbjct: 294 SANSTTATSASSTPLTSVNSTTTTS 318
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.49
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Frame = +3
Query: 303 SPPSPTHNVPAAMDSLPIPT--PLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIP 476
+PP+P +P A+ ++P+P+ P A ++ S+ VP+ P
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPA 1536
Query: 477 PEDKDVTNNKKNKGRLRVPQRAAG*CPRTDRRSPQ 581
P+ +P R++ P+ + PQ
Sbjct: 1537 PQHPSAAALSSAPADNSMPHRSSPYAPQEPVQKPQ 1571
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 0.86
Identities = 24/94 (25%), Positives = 33/94 (35%)
Frame = +3
Query: 306 PPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPED 485
PPSP P + PIP+ L + A + S P+P P PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAA---PVKSPPSAPSLPSAVPPMPPKVPPPPLS 207
Query: 486 KDVTNNKKNKGRLRVPQRAAG*CPRTDRRSPQVP 587
+ N ++ P AG P SP+ P
Sbjct: 208 QAPVANTSSRPSSFAP--PAGHAPNVTSESPKFP 239
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.86
Identities = 22/82 (26%), Positives = 31/82 (37%)
Frame = +3
Query: 252 NNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXA 431
N++ P+T T+ S PP+ P ++P PT +TS+
Sbjct: 274 NSSPLPTTSTSCTTSTSIPPTGNSTTPVT-PTVP-PTSTSSTSTPPPPASTSSTGTSSSP 331
Query: 432 FTSTSTPVPASGPIPPEDKDVT 497
STST S IPP T
Sbjct: 332 LPSTSTSCTTSTSIPPTGNSTT 353
Score = 28.3 bits (60), Expect = 1.5
Identities = 22/77 (28%), Positives = 28/77 (36%)
Frame = +3
Query: 267 PST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTS 446
PST T+ S PP+ P ++P PT +TS+ STS
Sbjct: 333 PSTSTSCTTSTSIPPTGNSTTPVT-PTVP-PTSTSSTSTPPPPASTSSTGTSSSPLLSTS 390
Query: 447 TPVPASGPIPPEDKDVT 497
T S IPP T
Sbjct: 391 TSCTTSTSIPPTGNSTT 407
Score = 26.2 bits (55), Expect = 6.1
Identities = 28/122 (22%), Positives = 37/122 (30%), Gaps = 2/122 (1%)
Frame = +3
Query: 234 PTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPI--PTPLCATSSTTAXXXXX 407
PT + P T T++ NSSP T S+P + L + T
Sbjct: 197 PTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTST 256
Query: 408 XXXXXXXAFTSTSTPVPASGPIPPEDKDVTNNKKNKGRLRVPQRAAG*CPRTDRRSPQVP 587
TSTS+ S P+P T + P T S P
Sbjct: 257 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTP 316
Query: 588 PP 593
PP
Sbjct: 317 PP 318
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 112 PNSSAPLKTASMKTTDN----ATSSSNVSMESPQPSSARTVLCSTLLSGRST 255
PN+S +KTAS + +TSS + S S P+S+ + S++ S +S+
Sbjct: 716 PNNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSS 767
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 136 TASMKTTDNATSSSNVSMESPQPS-SARTVLCSTLLSGRSTM 258
T+S + ++ SSS+ + SP PS S+ + S+++SG S++
Sbjct: 608 TSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSI 649
Score = 27.1 bits (57), Expect = 3.5
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 97 LPLQAPNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRSTMRPA 267
L L A +SS+ + T+ +T SSSN + S SSA ++ ST +S S+ P+
Sbjct: 721 LSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSA--IVSSTTVSNISSNLPS 775
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 27.1 bits (57), Expect = 3.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 335 GGDIVSWAWGAGVQSY 288
G I+SW+WG G +S+
Sbjct: 140 GSSILSWSWGLGFESF 155
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/112 (20%), Positives = 37/112 (33%)
Frame = +3
Query: 267 PST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTS 446
P + + + PP P P M +P P ++ S + + S
Sbjct: 126 PGSRPSVLNQEQVPPPPVR--PNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTAS 183
Query: 447 TPVPASGPIPPEDKDVTNNKKNKGRLRVPQRAAG*CPRTDRRSPQVPPPQRL 602
P P+PP + N+ G + A+ P P P P+RL
Sbjct: 184 ANAPL--PVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPAPPKPRRL 233
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 115 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSAR---TVLCSTLLSGRSTMRPA 267
+SS P+ +++ + +++SSS+ S S +PSS+ T + S+ T+ P+
Sbjct: 205 SSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPS 258
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 109 APNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRST 255
+P+SS+ T S ++ +++SSS+ S S SS+ + S+ S S+
Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 115 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRST 255
+SS+P +++ TT ++SSS+ S S SS+ + S+ S S+
Sbjct: 140 SSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +1
Query: 109 APNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRST 255
+P+SS+ ++S ++ +++SSS+ S S SS+ + S+ S S+
Sbjct: 154 SPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 219 GLVFDPTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAA 338
GL+ D + N + S T+ +GLN+ P+P VP +
Sbjct: 63 GLLNDSRANSVTNLPNSSN-TSQVGLNNISPAPVGYVPGS 101
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = +1
Query: 115 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRSTMRPA 267
+SS+P ++ TT ++ SSS S S SS+ T + S S+ RPA
Sbjct: 346 SSSSPSSSSFSSTTSSSKSSS--SFSSTVSSSSSTSSSTLTSSSSSSSRPA 394
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 126 PAKDGQYEDDRQCDKFFECVDGVATTKLCPDGLVFDPTIRK 248
P Y DD ++ E V G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 97 LPLQAPNSSAPLKTASMKTTDNATSSSNVSMESPQPS 207
+PL AP SS L+ S+ + + + S SP PS
Sbjct: 328 VPLPAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPS 364
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 249 INNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTP 365
+N +SP+T +G S P P + + + P+ +P
Sbjct: 164 VNKISSPTTPIVGMGQRGSYPLPNSQLAGRLSNSPVKSP 202
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/82 (24%), Positives = 31/82 (37%)
Frame = +3
Query: 234 PTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXX 413
P + + NA+ ST + P +P P+A SLP+ P +A
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA-----PI 455
Query: 414 XXXXXAFTSTSTPVPASGPIPP 479
A + P+P + P PP
Sbjct: 456 APPLPAGMPAAPPLPPAAPAPP 477
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 112 PNSSAPLKTASMKTTDNATSSSNVSMESPQ 201
P SS PL+ S TT ++S++ + SPQ
Sbjct: 13 PTSSIPLRQMSQPTTSAPSNSASSTPYSPQ 42
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -2
Query: 797 RLKESPIWGPLFGFPSKALGTNSSNPGNVLKAHRNF-WALLRYKPLRTWQPRSRGSTPF 624
R+ + + +FG P +G S N N K H AL+++ L + P S T F
Sbjct: 91 RMAAADLVEEVFGIPPTDVGIFSVNKENASKVHVVLDAALIQHNGLLAFHPSSSAKTVF 149
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +2
Query: 359 DPSVCNIFYNCIEGEATEVKC 421
+P CN+ Y CIE + C
Sbjct: 176 EPVKCNLCYECIESDELRANC 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,584,706
Number of Sequences: 5004
Number of extensions: 79741
Number of successful extensions: 349
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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