Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30348
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   2.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   2.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 477 AESGQTQVPEYSSK*RPAVHLTSVASP 397
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 793 LKNPQFGVPCSAFPQKPLEPIPRI 722
           L   +FG PC  + Q P+ P  +I
Sbjct: 76  LSATKFGFPCLQYTQLPVNPRDKI 99


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 793 LKNPQFGVPCSAFPQKPLEPIPRI 722
           L   +FG PC  + Q P+ P  +I
Sbjct: 76  LSATKFGFPCLQYTQLPVNPRDKI 99


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -1

Query: 723 SGKRSKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELG 577
           +G    G ++    P     PN A +    +    Y+   A++G GE G
Sbjct: 597 AGGAGGGGARSYVDPHTYEDPNQAVREFAREIDAGYITIEAIIGGGEFG 645


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 262 VALLIFLIVGSNTRPSGQSLVVATPSTHSKNL 167
           + LL FL++ S TRPS  +   A PS+   N+
Sbjct: 5   ILLLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 262 VALLIFLIVGSNTRPSGQSLVVATPSTHSKNL 167
           + LL FL++ S TRPS  +   A PS+   N+
Sbjct: 5   ILLLFFLLLSSCTRPSRGN---AVPSSQRGNV 33


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 464 WPDSAGRQGCNEQQKKQRTASSAP 535
           W D+   QGC   ++  +T S  P
Sbjct: 392 WEDTQDPQGCGAGKENYQTMSRDP 415


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 528 LEAVLCFFCCSLHPCLPAESGQ 463
           L  VL  F C L   LPAE+G+
Sbjct: 242 LPTVLISFLCVLVFYLPAEAGE 263


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 450 PVPASGPIPPEDKDVTNNKKNKGRLRVP 533
           P+  S P PP  ++V  N  ++   R+P
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIP 786


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +2

Query: 464 WPDSAGRQGCNEQQKKQRTASSAP 535
           W D+   QGC   ++  +T S  P
Sbjct: 392 WEDTQDPQGCGAGKENYQTMSRDP 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,847
Number of Sequences: 438
Number of extensions: 6114
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)