Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30348
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40070.1 68415.m04923 expressed protein 33 0.33
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ... 32 0.44
At5g38560.1 68418.m04662 protein kinase family protein contains ... 32 0.58
At2g47550.1 68415.m05934 pectinesterase family protein contains ... 31 0.76
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 31 1.0
At5g66850.1 68418.m08428 protein kinase family protein contains ... 30 1.8
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 30 1.8
At4g38550.1 68417.m05458 expressed protein 30 2.3
At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam ... 29 3.1
At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam ... 29 3.1
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ... 29 3.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 4.1
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 29 4.1
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 29 4.1
At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family p... 29 5.4
At1g74430.1 68414.m08623 myb family transcription factor (MYB95)... 29 5.4
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 29 5.4
At5g52680.1 68418.m06540 heavy-metal-associated domain-containin... 28 7.1
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c... 28 7.1
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family... 28 7.1
At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase, ... 28 7.1
At3g02930.1 68416.m00288 expressed protein ; expression support... 28 7.1
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG... 28 7.1
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 28 7.1
At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /... 28 9.4
At4g09080.1 68417.m01497 chloroplast outer membrane protein, put... 28 9.4
At3g47400.1 68416.m05154 pectinesterase family protein similar t... 28 9.4
At2g34430.1 68415.m04223 chlorophyll A-B binding protein / LHCII... 28 9.4
At2g34420.1 68415.m04219 chlorophyll A-B binding protein / LHCII... 28 9.4
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 28 9.4
At1g29930.1 68414.m03657 chlorophyll A-B binding protein 2, chlo... 28 9.4
At1g29920.1 68414.m03656 chlorophyll A-B binding protein 165/180... 28 9.4
At1g29910.1 68414.m03655 chlorophyll A-B binding protein 2, chlo... 28 9.4
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 28 9.4
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.7 bits (71), Expect = 0.33
Identities = 35/156 (22%), Positives = 59/156 (37%), Gaps = 9/156 (5%)
Frame = +3
Query: 249 INNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXX 428
++ T P+ + + L+SS +PT + P + + +T STT
Sbjct: 229 VSATTKPTPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTRSTPSTTTKSAGPSRSTTPL 288
Query: 429 AFTSTSTPVPASGPIPPEDKDVTNNKKNKGRLRVPQRAAG*C--PRTDRRSPQVPPPQR- 599
+ ++ + P S P P K ++ + R AA P + P P P +
Sbjct: 289 SRSTARSSTPTSRPTLPPSKTISRSSTPTRRPIASASAATTTANPTISQIKPSSPAPAKP 348
Query: 600 LPTFLRMPERCRA------P*PWLPSSERFITKESP 689
+PT + P RA PW PS + E+P
Sbjct: 349 MPTPSKNPALSRAASPTVRSRPWKPSDMPGFSLETP 384
>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 419
Score = 32.3 bits (70), Expect = 0.44
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 160 NATSSSNVSMESPQPSSARTVLCSTLLSGRSTMRPALQRRLRR*D*TPAPQAQLTMSPPQ 339
N T + N +P PSS+ + L L G T Q+R RR TP P+A++ P+
Sbjct: 8 NTTKNINTHHHNPPPSSSSSDL---LPDGNGTA--VTQKRKRRPAGTPDPEAEVVSLSPR 62
Query: 340 WILCPSRPLC 369
+L R +C
Sbjct: 63 TLLESDRYVC 72
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 31.9 bits (69), Expect = 0.58
Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 9/127 (7%)
Frame = +3
Query: 195 ATTKLCPDGLVFDPTIRKIN-NATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLC 371
ATT P V P + + +P+T + SPP T + P S P P+P
Sbjct: 103 ATTPPAPPQTVSPPPPPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGETPSPPKPSPST 162
Query: 372 ATSSTTAXXXXXXXXXXXXAFT-----STSTPVPASGPIPPEDKDV---TNNKKNKGRLR 527
T +TT + ST P P P+ P +K + T N G
Sbjct: 163 PTPTTTTSPPPPPATSASPPSSNPTDPSTLAPPPTPLPVVPREKPIAKPTGPASNNGNNT 222
Query: 528 VPQRAAG 548
+P + G
Sbjct: 223 LPSSSPG 229
>At2g47550.1 68415.m05934 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 560
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 124 APLKTASMKTTDNATSSSNVSMESPQPSSARTVLCS---TLLS-GRSTMRPALQRRLR 285
+P +A + NATS SN+ +P PS R+VL + + S GR ++R +L R R
Sbjct: 19 SPFISAQIPAIGNATSPSNICRFAPDPSYCRSVLPNQPGDIYSYGRLSLRRSLSRARR 76
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 31.1 bits (67), Expect = 1.0
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Frame = +3
Query: 108 SAQFKCPAKDGQYEDDRQCDKFFECVDGVATTKLCPDGLVFDPTIRKIN-NATSPST*TA 284
SA PA D E++ + D+ ++ + P P + + NAT+P+
Sbjct: 63 SAIAPSPAGD---EEEVEVDQIYDSSGNATAPAISPTTATLPPLLPILKENATAPTANAK 119
Query: 285 AIGLNSS-------PPSPTHNVPAAMDSL 350
A GLN S PSP+ N PAA+ L
Sbjct: 120 APGLNPSLVKDHATAPSPSANPPAALPGL 148
>At5g66850.1 68418.m08428 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain; identical
to cDNA MAP3K gamma protein kinase GI:2315152
Length = 716
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/93 (25%), Positives = 37/93 (39%)
Frame = +3
Query: 315 PTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKDV 494
PT + P + P+P+P S+ A+++ P+ SG PP D+
Sbjct: 182 PTMSAPTSPYMSPVPSPQ-RKSTGHDLPFFYLPPKSNQAWSAPDMPLDTSGLPPPAFYDI 240
Query: 495 TNNKKNKGRLRVPQRAAG*CPRTDRRSPQVPPP 593
T + + PQ + PR RSPQ P
Sbjct: 241 TAFSTDNSPIHSPQPRS---PRKQIRSPQPSRP 270
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +3
Query: 300 SSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPIPP 479
S+ P P P A+ P+P PL +T S P PA P PP
Sbjct: 75 STSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPP 134
>At4g38550.1 68417.m05458 expressed protein
Length = 612
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = +3
Query: 297 NSSPPSPTHNVPAAMDSLPIPTP 365
NSSPPSP H PAA S P P P
Sbjct: 275 NSSPPSPLH--PAASHSPPPPQP 295
>At3g02540.2 68416.m00243 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 299
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 300 SSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 473
S+P +P P P P P+ AT + T A S+STP P S P+
Sbjct: 115 SAPVAPAPTRPPPPAPTPTPAPVAATETVTT-----PIPEPVPATISSSTPAPDSAPV 167
>At3g02540.1 68416.m00242 ubiquitin family protein contains Pfam
profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N
domain;
Length = 419
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 300 SSPPSPTHNVPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXAFTSTSTPVPASGPI 473
S+P +P P P P P+ AT + T A S+STP P S P+
Sbjct: 115 SAPVAPAPTRPPPPAPTPTPAPVAATETVTT-----PIPEPVPATISSSTPAPDSAPV 167
>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 439
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 169 SSSNVSMESPQPSSARTVLCSTLLSGRSTMRPALQRRLRR*D*TPAPQAQLTMSPPQWIL 348
S+ N + SS+ S+ +G +T + Q+R RR TP P A++ P+ +L
Sbjct: 3 SNKNTNTCCVVSSSSSDPFLSSSENGVTTTNTSTQKRKRRPAGTPDPDAEVVSLSPRTLL 62
Query: 349 CPSRPLC 369
R +C
Sbjct: 63 ESDRYIC 69
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 4.1
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 2/130 (1%)
Frame = +3
Query: 210 CPDGLVFDPTIRKINNATSPST*TAAIGLNS--SPPSPTHNVPAAMDSLPIPTPLCATSS 383
C DG + ++ ++ S S + G N+ SPP P+ + + LP P P S
Sbjct: 391 CIDGKEDQRSSKECSSPASRSVDCSKFGCNNFFSPPPPSFKMSPTVRVLPPPPPSSKMSP 450
Query: 384 TTAXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKDVTNNKKNKGRLRVPQRAAG*CPRT 563
T +F +TP P S + P + +K + +A P
Sbjct: 451 TFRATPPPPSSKMSPSF--RATPPPPSSKMSPSFRATPPPPSSK--MSPSVKAYPPPPPP 506
Query: 564 DRRSPQVPPP 593
P PPP
Sbjct: 507 PEYEPSPPPP 516
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 222 LVFDPTIRKINNATSPS-T*TAAIGL----NSSP----PSPTHNVPAAMDSLPIPTPLCA 374
L+ P +N+A SP+ T T G+ NS P P+PT + P +P P+PL
Sbjct: 41 LMTAPISNSVNSAASPAMTVTTTEGIVIQNNSQPNISSPNPTSSNPPIGAQIPSPSPLSH 100
Query: 375 TSST 386
SS+
Sbjct: 101 PSSS 104
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Frame = +3
Query: 222 LVFDPTIRKINNATSPS-T*TAAIGL----NSSP----PSPTHNVPAAMDSLPIPTPLCA 374
L+ P +N+A SP+ T T G+ NS P P+PT + P +P P+PL
Sbjct: 41 LMTAPISNSVNSAASPAMTVTTTEGIVIQNNSQPNISSPNPTSSNPPIGAQIPSPSPLSH 100
Query: 375 TSST 386
SS+
Sbjct: 101 PSSS 104
>At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family
protein similar to fasciclin-like
arabinogalactan-protein 1 [Arabidopsis thaliana]
gi|13377776|gb|AAK20857;
Length = 255
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 112 PNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCS 231
P SSAP A+ + ++NA S++ VS QP+ A T+L S
Sbjct: 207 PPSSAP-GAAADEPSENAGSANGVSRNDSQPAFAFTLLMS 245
>At1g74430.1 68414.m08623 myb family transcription factor (MYB95)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 271
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 112 PNSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGR 249
P + P T S+ T + TSSS S +P P+S+ CS+ S R
Sbjct: 123 PMTHEPTTTTSL--TVDVTSSSTTSSPTPSPTSSSFSSCSSTGSAR 166
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Frame = +3
Query: 264 SPST*TAAIGLNSSPPSPTHN----VPAAMDSLPIPTPLCATSSTTAXXXXXXXXXXXXA 431
SP++ A +S+PP T + P DS P P+P +S A
Sbjct: 4 SPTSSPPAPSADSAPPPDTSSDGSAAPPPTDSAPPPSPPADSSPPPALPSLPPAVFSPPP 63
Query: 432 FTSTSTPVPA-SGPIPPED 485
S+ P P S P PP D
Sbjct: 64 TVSSPPPPPLDSSPPPPPD 82
>At5g52680.1 68418.m06540 heavy-metal-associated domain-containing
protein low similarity to pneumococcal surface protein A
PspA [Streptococcus pneumoniae] GI:7800654; contains
Pfam profile PF00403: Heavy-metal-associated domain
Length = 238
Score = 28.3 bits (60), Expect = 7.1
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +3
Query: 132 KDGQYEDDRQCDKFFECVDGVATT-KLCPDGLVFDPTIRKINNATSPST*TAAIGLNSSP 308
K G++ K E + V+ K PDG V D T KINNA S A + + +
Sbjct: 135 KGGEFNKIAMSTKLKEIDESVSVIIKSGPDGQV-DVTNIKINNARKTSRVPAPVPVRA-- 191
Query: 309 PSPTHNVPAAMDSLP 353
P+PT A S+P
Sbjct: 192 PAPTPKPAPAPPSVP 206
>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
contains Pfam domain PF02891: MIZ zinc finger
Length = 703
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +3
Query: 216 DGLVFDPTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAAMDSLPIPTPLCATSS 383
D + DP I T+P A+ S +P ++D +P+P P T S
Sbjct: 423 DVIALDPEILSALGNTAPQPHQASNTGTGQQYSNLSQIPMSIDPMPVPVPFSQTPS 478
>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to root nodule extensin
[Pisum sativum] gi|15021750|gb|AAK77902; Common family
members: At5g19800, At5g57070, At1g72790 [Arabidopsis
thaliana]
Length = 102
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 222 LVFDPTIRKINNATSPST*TAAIGLNSSPPSPTHNVPAAM-DSLPIPTP 365
L+ PT + + SPS + + L PP P ++ P A+ +LPIP P
Sbjct: 29 LLKTPTNYQPLYSPSPSPYRSPVTLPPPPPHPAYSRPVALPPTLPIPHP 77
>At3g29430.1 68416.m03697 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to gi:413730;
similar to geranylgeranyl pyrophosphate synthase,
chloroplast precursor GB:P34802 from [Arabidopsis
thaliana]
Length = 357
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +1
Query: 115 NSSAPLKTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRSTMRPAL 270
NS+ K+ ++ ++ +++ NVS+ +P + + + +LL+G +RP L
Sbjct: 58 NSAFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLL 109
>At3g02930.1 68416.m00288 expressed protein ; expression supported
by MPSS
Length = 806
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 435 TSTSTPVPASGPIPPE-DKDVTNNKKNKGRLRVPQRAAG*CPRTDRRSPQVP-PPQR 599
+STS VP I + D + + + + RL + ++ P TD+RSP+ P PP++
Sbjct: 18 SSTSLRVPRLTRIVTKPDSNSPSPTQQQSRLSFERPSSNSKPSTDKRSPKAPTPPEK 74
>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
identical to P-glycoprotein GI:3849833 from [Arabidopsis
thaliana]; homologous to mammalian mdr gene,contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1286
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 KTASMKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRSTM-RPALQRRL 282
K M+ + T+ SN S +PSSAR + S +++ S+ R RRL
Sbjct: 602 KLIKMQEAAHETAMSNARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRL 652
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 655 GSQGH-GARHRSGIRRNVGSRWGGGTWGERR 566
GS G+ G R + G R G +GGG G+RR
Sbjct: 133 GSGGYRGRRDQGGYNRGGGGGYGGGYGGDRR 163
>At5g62310.1 68418.m07822 incomplete root hair elongation (IRE) /
protein kinase, putative nearly identical to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783
Length = 1168
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 145 MKTTDNATSSSNVSMESPQPSSARTVLCSTLLSGRSTM 258
M T+ SS S+ P P++ R LLSGR T+
Sbjct: 597 MSMTNGTKDSSAGSLTPPSPATPRNSQVDLLLSGRKTI 634
>At4g09080.1 68417.m01497 chloroplast outer membrane protein,
putative similar to chloroplastic outer envelope
membrane protein (OEP75) [Pisum sativum] GI:633607
Length = 407
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 685 AQKLRCAFRTFPGFEELVPRAFEGKPNKGPQIGDSLSR 798
++KL F PG+E+LVP F G+ I ++L+R
Sbjct: 127 SRKLSPVFTGGPGYEDLVPPMFVGRDCLKATITENLTR 164
>At3g47400.1 68416.m05154 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Vitis vinifera
GI:15081598, Lycopersicon esculentum SP|Q43143
SP|P14280; contains Pfam profile PF01095 pectinesterase
Length = 594
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 291 GLNSSPPSPTHNVPAAMDSLPIPTPLCATSSTT 389
G +PP HNV ++ P PTP + S+T+
Sbjct: 30 GGTDAPPPWDHNVSPPPETAPSPTPTSSPSTTS 62
>At2g34430.1 68415.m04223 chlorophyll A-B binding protein / LHCII
type I (LHB1B1) identical to photosystem II type I
chlorophyll a/b binding protein [Arabidopsis thaliana]
GI:16366
Length = 266
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 711 SKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELGVSDDL 562
S G +LG+PSL + ++ A + VE V G G LG ++DL
Sbjct: 139 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL 188
>At2g34420.1 68415.m04219 chlorophyll A-B binding protein / LHCII
type I (LHB1B2) identical to GB:X64460 photosystem II
type I chlorophyll a/b binding protein [Arabidopsis
thaliana] GI:16364
Length = 265
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 711 SKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELGVSDDL 562
S G +LG+PSL + ++ A + VE V G G LG ++DL
Sbjct: 138 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDL 187
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Frame = +3
Query: 234 PTIRKINNATSPST*TAAIGLNSSPPSPT----HNVPAAMDSLPIPTPL----CATSSTT 389
P I + + SPS+ + +I PP P + +A+ S P+P PL ++
Sbjct: 578 PPISSLRSTPSPSSTSNSIATQGPPPPPPPPPLQSHRSALSSSPLPPPLPPKKLLATTNP 637
Query: 390 AXXXXXXXXXXXXAFTSTSTPVPASGPIPPEDKDVTNNKKNKGRL 524
TS+ V S P+PP ++ + G +
Sbjct: 638 PPPPPPPLHSNSRMGAPTSSLVLKSPPVPPPPAPAPLSRSHNGNI 682
>At1g29930.1 68414.m03657 chlorophyll A-B binding protein 2,
chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2B)
identical to SP|P04778 Chlorophyll A-B binding protein
2, chloroplast precursor (LHCII type I CAB-2) (CAB-140)
(LHCP) {Arabidopsis thaliana}
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 711 SKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELGVSDDL 562
S G +LG+PSL + ++ A + VE V G G LG ++DL
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
>At1g29920.1 68414.m03656 chlorophyll A-B binding protein 165/180,
chloroplast / LHCII type I CAB-165/180 identical to
SP|P04777 Chlorophyll A-B binding protein 165/180,
chloroplast precursor (LHCII type I CAB-165/180) (LHCP)
{Arabidopsis thaliana}; similar to photosystem II type I
chlorophyll a /b binding protein GI:16364 from
[Arabidopsis thaliana]
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 711 SKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELGVSDDL 562
S G +LG+PSL + ++ A + VE V G G LG ++DL
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
>At1g29910.1 68414.m03655 chlorophyll A-B binding protein 2,
chloroplast / LHCII type I CAB-2 / CAB-140 (CAB2A)
identical to SP|P04778 Chlorophyll A-B binding protein
2, chloroplast precursor (LHCII type I CAB-2) (CAB-140)
(LHCP) {Arabidopsis thaliana}
Length = 267
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 711 SKGASQFLGSPSL*TSPNLAAKVTGLDTVQAYVETLAVVGVGELGVSDDL 562
S G +LG+PSL + ++ A + VE V G G LG ++DL
Sbjct: 140 SDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDL 189
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 567 RRSPQVPPPQRLPTFLRMPERCRA 638
RR P PPP+R P R+P+ A
Sbjct: 117 RRDPSAPPPKRDPNAPRLPDSTSA 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,733,199
Number of Sequences: 28952
Number of extensions: 482759
Number of successful extensions: 2029
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1998
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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