Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30347
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   3.4  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   7.9  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    25   7.9  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.9  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 471 GGTVVKYIFLVIFAISSRRFPAIGSCCYYYVAFSYNILLRGAQSCESV 328
           G TV  Y+  ++  I +  F    SC +     + N+LL  A SC SV
Sbjct: 204 GSTVGMYVVGLVLTILTYVFFCASSCSFNQAINTINLLLCIAVSCLSV 251


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 260 FTTRTIPCAIRWCVRSVRCFSSV 328
           FT + +   ++WCV    CF+SV
Sbjct: 460 FTHKAMVFDVKWCVSEPCCFASV 482


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 462 VVKYIFLVIFAISSRRFPAIGSC 394
           + KYI+L IF   + R P   +C
Sbjct: 2   ICKYIYLAIFVFGTARIPKPSAC 24


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 531 PVRGRGEFLCGSDNRTYSSLCRLDLHNCVHRNK 629
           P++G  ++L    NR    LCR   H  +H NK
Sbjct: 767 PIKGTLDYLMAKANRKQIPLCR-SCHMKLHANK 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,623
Number of Sequences: 5004
Number of extensions: 44418
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)