Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30347
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0074 + 530207-532603                                             31   1.2  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    29   3.6  
07_03_1362 - 26006159-26006461,26006691-26006841,26006975-260072...    28   8.3  

>08_01_0074 + 530207-532603
          Length = 798

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -2

Query: 429 ISSRRFPAIGSCCYYYVAFSYNILLRGAQSCESVTEEKHLTLLTHQRMA 283
           I+ RR PA+G C     AFSYNILL+G   C+    ++ L LL H  MA
Sbjct: 153 IALRRMPALG-CTPN--AFSYNILLKGL--CDENRSQQALHLL-HTMMA 195


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 574 RLSEPQRNSPRPRTGQPTQRSGYSHHCRDLHQYLWR 467
           R S+P++ SP  R   PT+RSG +     + Q +W+
Sbjct: 110 RDSQPRKQSPTKRLSSPTKRSGEAPVKLLMEQDMWK 145


>07_03_1362 -
           26006159-26006461,26006691-26006841,26006975-26007212,
           26007293-26007503,26007631-26007755,26007895-26008023,
           26008540-26009326
          Length = 647

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 535 TGQPTQRSGYSHHCRDLHQYLWRH 464
           TG+    +  S HC DL   +WRH
Sbjct: 528 TGRRNSYAVVSEHCEDLFSLVWRH 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,552,139
Number of Sequences: 37544
Number of extensions: 331104
Number of successful extensions: 1001
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)