Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30347
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.15 
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    32   0.46 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppress...    28   5.6  
U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.        28   5.6  
S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.        28   5.6  
Z81568-11|CAB04593.1|  681|Caenorhabditis elegans Hypothetical p...    28   7.4  

>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 555 LCGSDNRTYSSLCRLDLHNCVHR 623
           +CGSD  TYS+LC L +  C H+
Sbjct: 819 VCGSDGTTYSNLCELKMFACKHQ 841



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 549 EFLCGSDNRTYSSLCRLDLHNCV 617
           + +CGSD+ +YSS C L + +CV
Sbjct: 182 DVVCGSDHVSYSSFCHLSVRSCV 204



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 510 PDRCVGCPVRGRGEFLCGSDNRTYSSLCRLDLHNCVHRNKKPVT 641
           PD C    +   G+ +CG+D  TYSS C +    C H++K  +T
Sbjct: 545 PDDCPSYEME-EGKEVCGTDGVTYSSECHMKKSAC-HQSKFVMT 586



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 516 RCVGCPVRGRGEF--LCGSDNRTYSSLCRLDLHNCV 617
           +CV CP     EF  +CGSD +TYS+ CRL    C+
Sbjct: 470 KCV-CP-SCTDEFKEVCGSDGKTYSNECRLQNAACM 503


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 549 EFLCGSDNRTYSSLCRLDLHNCV 617
           + +CGSD+ +YSS C L + +CV
Sbjct: 174 DVVCGSDHVSYSSFCHLSVRSCV 196



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 555 LCGSDNRTYSSLCRLDLHNC 614
           +CGSD  TYS+LC L +  C
Sbjct: 880 VCGSDGTTYSNLCELKMFAC 899



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 510 PDRCVGCPVRGRGEFLCGSDNRTYSSLCRLDLHNCVHRNKKPVT 641
           PD C    +   G+ +CG+D  TYSS C +    C H++K  +T
Sbjct: 537 PDDCPSYEME-EGKEVCGTDGVTYSSECHMKKSAC-HQSKFVMT 578



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 516 RCVGCPVRGRGEF--LCGSDNRTYSSLCRLDLHNCV 617
           +CV CP     EF  +CGSD +TYS+ CRL    C+
Sbjct: 462 KCV-CP-SCTDEFKEVCGSDGKTYSNECRLQNAACM 495


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 519 CVGCPVRGRGEFLCGSDNRTYSSLCRLDLHNCVHRNKK 632
           C+ CP   +   +C + N T+ +LC    +NC  RN +
Sbjct: 308 CITCPKDEKKIPICDNRNMTHPTLCSFIQYNCEARNNE 345



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 555 LCGSDNRTYSSLCRLDLHNCVHRNKK 632
           +CG+DN TY++LC L    CV R  +
Sbjct: 28  VCGTDNVTYNNLCFL---RCVQRTNE 50


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
           protein F13B9.1c protein.
          Length = 1609

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 574 RLSEPQRNSPRPRTGQPTQRSGYSHHCRDLHQYLWRHCRKIHLPRH 437
           RL    R S R  TG  T    Y+H+ +  H Y  +H +  H  RH
Sbjct: 587 RLDPNARPSSRQATGYQTANQSYNHYDQHNHSY--QHQQMQHRGRH 630


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
           protein F13B9.1b protein.
          Length = 1614

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 574 RLSEPQRNSPRPRTGQPTQRSGYSHHCRDLHQYLWRHCRKIHLPRH 437
           RL    R S R  TG  T    Y+H+ +  H Y  +H +  H  RH
Sbjct: 587 RLDPNARPSSRQATGYQTANQSYNHYDQHNHSY--QHQQMQHRGRH 630


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
           protein F13B9.1a protein.
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 574 RLSEPQRNSPRPRTGQPTQRSGYSHHCRDLHQYLWRHCRKIHLPRH 437
           RL    R S R  TG  T    Y+H+ +  H Y  +H +  H  RH
Sbjct: 587 RLDPNARPSSRQATGYQTANQSYNHYDQHNHSY--QHQQMQHRGRH 630


>U39853-2|AAK39225.1|  771|Caenorhabditis elegans Kinase suppressor
           of activatedras protein 1 protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 490 LDNDENNLTAVWVVPCAVAANSSAVRIIEHIRRCAVWIFTTAFTVTRNR*RWLAE 654
           +D ++  + A+W     ++A +     I H+  C++  F   F++T    R LA+
Sbjct: 75  IDREKREINAIWFTFVGLSAQN-----IRHLEICSITDFNALFSITNQELRSLAD 124


>U38820-1|AAA92436.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 490 LDNDENNLTAVWVVPCAVAANSSAVRIIEHIRRCAVWIFTTAFTVTRNR*RWLAE 654
           +D ++  + A+W     ++A +     I H+  C++  F   F++T    R LA+
Sbjct: 75  IDREKREINAIWFTFVGLSAQN-----IRHLEICSITDFNALFSITNQELRSLAD 124


>S80647-1|AAB35769.1|  771|Caenorhabditis elegans KSR-1 protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +1

Query: 490 LDNDENNLTAVWVVPCAVAANSSAVRIIEHIRRCAVWIFTTAFTVTRNR*RWLAE 654
           +D ++  + A+W     ++A +     I H+  C++  F   F++T    R LA+
Sbjct: 75  IDREKREINAIWFTFVGLSAQN-----IRHLEICSITDFNALFSITNQELRSLAD 124


>Z81568-11|CAB04593.1|  681|Caenorhabditis elegans Hypothetical
           protein K08E3.6 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 505 SHHCRDLHQYLWRH-CRKIHLP 443
           S  CRD HQ + R  C K+HLP
Sbjct: 377 SMKCRDCHQVVHRSCCNKLHLP 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,828
Number of Sequences: 27780
Number of extensions: 267923
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)