Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30347
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63360.1 68416.m07131 defensin-related contains weak similari...    30   1.3  
At1g24200.1 68414.m03052 paired amphipathic helix repeat-contain...    28   5.2  

>At3g63360.1 68416.m07131 defensin-related contains weak similarity
           to defensin [Capsicum annuum] gi|1200228|emb|CAA65045
          Length = 85

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 528 CPVRGRGEFLCGSDNR---TYSSLCRLDLHNCVHRNKKP 635
           C ++G GE LC +  +     S +C  D H C+ RN+KP
Sbjct: 44  CWLKGAGEGLCDNLCKYEGAISGVCVSDPHRCLCRNRKP 82


>At1g24200.1 68414.m03052 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 196

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 567 DNRTYSSLCRLDLHNCVHRNKKPVTLACRRLLSVFL 674
           D+R Y S+  LD+ N   +++KP+T   R +  +FL
Sbjct: 112 DDRVYKSV--LDILNMYRKDRKPITAVYREVAILFL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,183
Number of Sequences: 28952
Number of extensions: 248727
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)